* using log directory 'd:/Rcompile/CRANpkg/local/4.5/causalPAF.Rcheck' * using R Under development (unstable) (2024-12-01 r87412 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'causalPAF/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'causalPAF' version '1.2.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'causalPAF' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) eval_make_DAG.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_DAG.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eval_make_formula.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indirect_PAF_Sjolander_onesimulation.Rd:65: Lost braces; missing escapes or markup? 65 | \if{html}{\figure{CausalDAG.jpg} {options: width=100 alt="Causal Bayesian network DAG"} } | ^ checkRd: (-1) path_specific_onesimulation.Rd:54: Lost braces; missing escapes or markup? 54 | \if{html}{\figure{CausalDAG.jpg} {options: width=100 alt="Causal Bayesian network DAG"} } | ^ checkRd: (-1) strokedata.Rd:49: Lost braces; missing escapes or markup? 49 | individual’s behaviour SB = {Smoking, Alcohol intake, inactivity, diet and stress}, | ^ checkRd: (-1) strokedata.Rd:50: Lost braces; missing escapes or markup? 50 | their physiology SP = {High blood pressure, ApoB/ApoA ratio, Waist hip ratio} | ^ checkRd: (-1) strokedata.Rd:52: Lost braces; missing escapes or markup? 52 | SD = {Cardiac risk factors, Preclinical diabetes}. | ^ checkRd: (-1) strokedata.Rd:60: Lost braces; missing escapes or markup? 60 | {SC , SB , SP , SD , Y }, and summarized by the causal graphs in | ^ checkRd: (-1) strokedata_smallSample.Rd:49: Lost braces; missing escapes or markup? 49 | individual’s behaviour SB = {Smoking, Alcohol intake, inactivity, diet and stress}, | ^ checkRd: (-1) strokedata_smallSample.Rd:50: Lost braces; missing escapes or markup? 50 | their physiology SP = {High blood pressure, ApoB/ApoA ratio, Waist hip ratio} | ^ checkRd: (-1) strokedata_smallSample.Rd:52: Lost braces; missing escapes or markup? 52 | SD = {Cardiac risk factors, Pre clinical diabetes}. | ^ checkRd: (-1) strokedata_smallSample.Rd:60: Lost braces; missing escapes or markup? 60 | {SC , SB , SP , SD , Y }, and summarized by the causal graphs in | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [3s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [1s] OK Running 'spelling.R' [0s] * checking PDF version of manual ... [24s] OK * checking HTML version of manual ... [4s] OK * DONE Status: 1 NOTE