* using log directory 'd:/Rcompile/CRANpkg/local/4.5/itsdm.Rcheck' * using R Under development (unstable) (2024-10-29 r87275 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'itsdm/DESCRIPTION' ... OK * this is package 'itsdm' version '0.2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'itsdm' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [9s] OK * checking whether the package can be loaded with stated dependencies ... [9s] OK * checking whether the package can be unloaded cleanly ... [9s] OK * checking whether the namespace can be loaded with stated dependencies ... [9s] OK * checking whether the namespace can be unloaded cleanly ... [10s] OK * checking loading without being on the library search path ... [9s] OK * checking whether startup messages can be suppressed ... [9s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [26s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: cmcc_bioclim.Rd: sf, sfc detect_envi_change.Rd: st_as_stars, read_stars, explain, geom_smooth dim_reduce.Rd: sf, sfc future_cmcc_bioclim.Rd: sf, sfc future_worldclim2.Rd: sf, sfc independent_response.Rd: st_as_stars, read_stars isotree_po.Rd: isolation.forest, sf mainland_africa.Rd: sf, sfc marginal_response.Rd: st_as_stars, read_stars plot.EnvironmentalOutlier.Rd: geom_sf plot.ShapDependence.Rd: geom_smooth shap_dependence.Rd: st_as_stars, read_stars, explain shap_spatial_response.Rd: st_as_stars, read_stars, explain spatial_response.Rd: st_as_stars, read_stars, explain suspicious_env_outliers.Rd: outlier.tree, crs, sf variable_analysis.Rd: st_as_stars, read_stars, explain variable_contrib.Rd: explain worldclim2.Rd: sf, sfc Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [60s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [6s] OK * checking PDF version of manual ... [24s] OK * checking HTML version of manual ... [9s] OK * DONE Status: 1 NOTE