* using log directory 'd:/Rcompile/CRANpkg/local/4.2/GauPro.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * checking for file 'GauPro/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GauPro' version '0.2.11' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GauPro' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] OK * checking Rd files ... [4s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [34s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [158s] ERROR Running 'testthat.R' [158s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GauPro) > > test_check("GauPro") Increasing nugget to get invertibility from 2.173835e-06 to 4.347669e-06 Increasing nugget to get invertibility from 4.347669e-06 to 8.695338e-06 [ FAIL 1 | WARN 7 | SKIP 0 | PASS 3049 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_kernel_model_and_kernels.R:701:7'): Factor kernels ─────────── `predict(gp, 1:3, se.fit = T)` generated warnings: * Negative s2 predictions are being set to 0.000249399784361853 (2 values, min=-0.00180814452590639) bad pred in OrderedFactorKernel [ FAIL 1 | WARN 7 | SKIP 0 | PASS 3049 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [16s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR