CRAN Package Check Results for Package AFM

Last updated on 2018-02-19 19:47:28 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 10.37 81.50 91.87 OK
r-devel-linux-x86_64-debian-gcc 1.2.2 9.60 70.29 79.89 OK
r-devel-linux-x86_64-fedora-clang 1.2.2 122.80 OK
r-devel-linux-x86_64-fedora-gcc 1.2.2 123.80 OK
r-devel-windows-ix86+x86_64 1.2.2 17.00 104.00 121.00 OK
r-patched-linux-x86_64 1.2.2 5.92 92.75 98.67 WARN
r-patched-solaris-x86 1.2.2 159.20 OK
r-release-linux-x86_64 1.2.2 5.77 93.71 99.48 WARN
r-release-windows-ix86+x86_64 1.2.2 26.00 139.00 165.00 OK
r-release-osx-x86_64 1.2.2 OK
r-oldrel-windows-ix86+x86_64 1.2.2 20.00 123.00 143.00 OK
r-oldrel-osx-x86_64 1.2.2 ERROR

Check Details

Version: 1.2.2
Check: dependencies in R code
Result: NOTE
    No protocol specified
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: S3 generic/method consistency
Result: WARN
    No protocol specified
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: replacement functions
Result: WARN
    No protocol specified
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: foreign function calls
Result: NOTE
    No protocol specified
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: R code for possible problems
Result: NOTE
    No protocol specified
    No protocol specified
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: for missing documentation entries
Result: WARN
    No protocol specified
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: for code/documentation mismatches
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: Rd \usage sections
Result: NOTE
    No protocol specified
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: data for non-ASCII characters
Result: NOTE
     No protocol specified
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: examples
Result: ERROR
    Running examples in ‘AFM-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: evaluateVariogramModels
    > ### Title: evaluateVariogramModels method to evaluate the basic variogram
    > ### models
    > ### Aliases: evaluateVariogramModels
    > ### evaluateVariogramModels,AFMImageVariogramAnalysis-method
    >
    > ### ** Examples
    >
    > library(AFM)
    >
    > data("AFMImageOfRegularPeaks")
    > # take an extract of the image to fasten the calculation
    > AFMImage<-extractAFMImage(AFMImageOfRegularPeaks, 40, 40, 32)
    [1] "40 40 31 40 71 40 71"
    > # e.g. AFMImage@fullfilename<-"/users/ubuntu/AFMImageOfRegularPeaks-extract.txt"
    > AFMImage@fullfilename<-paste(tempdir(), "AFMImageOfRegularPeaks-extract.txt", sep="/")
    >
    > AFMImageAnalyser<-AFMImageAnalyser(AFMImage)
    Warning in data.table(lib = c("AFM", "gstat", "fractaldim", "fftwtools"), :
     Item 1 is of size 4 but maximum size is 5 (recycled leaving remainder of 1 items)
    >
    > # Variogram analysis
    > sampleFitPercentage<-3.43/100
    > variogramAnalysis<-AFMImageVariogramAnalysis(sampleFitPercentage)
    > variogramAnalysis@omnidirectionalVariogram<-
    + AFM::calculateOmnidirectionalVariogram(AFMImage=AFMImage,
    + AFMImageVariogramAnalysis=variogramAnalysis)
    [1] "using automatic width of 1"
    [1] "calculating omnidirectional variogram using width of 1 ..."
    Error in CRS("+init") : no colon in init= string
    Calls: <Anonymous> -> CRS
    Execution halted
Flavor: r-oldrel-osx-x86_64