Last updated on 2018-10-24 03:55:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.4 | 18.76 | 89.60 | 108.36 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.4 | 13.11 | 73.22 | 86.33 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.4 | 214.80 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.4 | 207.26 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.2.4 | 42.00 | 214.00 | 256.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.4 | 16.96 | 75.05 | 92.01 | OK | |
| r-patched-solaris-x86 | 1.2.4 | 254.60 | OK | |||
| r-release-linux-x86_64 | 1.2.4 | 13.07 | 80.19 | 93.26 | OK | |
| r-release-windows-ix86+x86_64 | 1.2.4 | 42.00 | 200.00 | 242.00 | OK | |
| r-release-osx-x86_64 | 1.2.4 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.4 | 22.00 | 168.00 | 190.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2.4 | WARN |
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in 'AFM-Ex.R' failed
The error most likely occurred in:
> ### Name: evaluateVariogramModels
> ### Title: evaluateVariogramModels method to evaluate the basic variogram
> ### models
> ### Aliases: evaluateVariogramModels evaluateVariogramModels
> ### evaluateVariogramModels,AFMImageVariogramAnalysis-method
>
> ### ** Examples
>
> library(AFM)
>
> data("AFMImageOfRegularPeaks")
> # take an extract of the image to fasten the calculation
> AFMImage<-extractAFMImage(AFMImageOfRegularPeaks, 40, 40, 32)
[1] "40 40 31 40 71 40 71"
> # e.g. AFMImage@fullfilename<-"/users/ubuntu/AFMImageOfRegularPeaks-extract.txt"
> AFMImage@fullfilename<-paste(tempdir(), "AFMImageOfRegularPeaks-extract.txt", sep="/")
>
> AFMImageAnalyser<-AFMImageAnalyser(AFMImage)
>
> # Variogram analysis
> sampleFitPercentage<-3.43/100
> variogramAnalysis<-AFMImageVariogramAnalysis(sampleFitPercentage)
> variogramAnalysis@omnidirectionalVariogram<-
+ AFM::calculateOmnidirectionalVariogram(AFMImage=AFMImage,
+ AFMImageVariogramAnalysis=variogramAnalysis)
[1] "using automatic width of 1"
[1] "calculating omnidirectional variogram using width of 1 ..."
> variogramAnalysis@directionalVariograms<-
+ AFM::calculateDirectionalVariograms(AFMImage=AFMImage,
+ AFMImageVariogramAnalysis=variogramAnalysis)
[1] "calculating directional variograms..."
[1] "using automatic width of 1"
Error in `[[<-.data.frame`(`*tmp*`, i, value = c(992, 960, 928, 2694, :
replacement has 29 rows, data has 15
Calls: <Anonymous> ... [<-.data.frame -> xpdrows.data.frame -> [[<- -> [[<-.data.frame
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.2.4
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64