CRAN Package Check Results for Package AFM

Last updated on 2018-10-24 03:55:10 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.4 18.76 89.60 108.36 OK
r-devel-linux-x86_64-debian-gcc 1.2.4 13.11 73.22 86.33 OK
r-devel-linux-x86_64-fedora-clang 1.2.4 214.80 OK
r-devel-linux-x86_64-fedora-gcc 1.2.4 207.26 OK
r-devel-windows-ix86+x86_64 1.2.4 42.00 214.00 256.00 ERROR
r-patched-linux-x86_64 1.2.4 16.96 75.05 92.01 OK
r-patched-solaris-x86 1.2.4 254.60 OK
r-release-linux-x86_64 1.2.4 13.07 80.19 93.26 OK
r-release-windows-ix86+x86_64 1.2.4 42.00 200.00 242.00 OK
r-release-osx-x86_64 1.2.4 WARN
r-oldrel-windows-ix86+x86_64 1.2.4 22.00 168.00 190.00 OK
r-oldrel-osx-x86_64 1.2.4 WARN

Check Details

Version: 1.2.4
Check: examples
Result: ERROR
    Running examples in 'AFM-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: evaluateVariogramModels
    > ### Title: evaluateVariogramModels method to evaluate the basic variogram
    > ### models
    > ### Aliases: evaluateVariogramModels evaluateVariogramModels
    > ### evaluateVariogramModels,AFMImageVariogramAnalysis-method
    >
    > ### ** Examples
    >
    > library(AFM)
    >
    > data("AFMImageOfRegularPeaks")
    > # take an extract of the image to fasten the calculation
    > AFMImage<-extractAFMImage(AFMImageOfRegularPeaks, 40, 40, 32)
    [1] "40 40 31 40 71 40 71"
    > # e.g. AFMImage@fullfilename<-"/users/ubuntu/AFMImageOfRegularPeaks-extract.txt"
    > AFMImage@fullfilename<-paste(tempdir(), "AFMImageOfRegularPeaks-extract.txt", sep="/")
    >
    > AFMImageAnalyser<-AFMImageAnalyser(AFMImage)
    >
    > # Variogram analysis
    > sampleFitPercentage<-3.43/100
    > variogramAnalysis<-AFMImageVariogramAnalysis(sampleFitPercentage)
    > variogramAnalysis@omnidirectionalVariogram<-
    + AFM::calculateOmnidirectionalVariogram(AFMImage=AFMImage,
    + AFMImageVariogramAnalysis=variogramAnalysis)
    [1] "using automatic width of 1"
    [1] "calculating omnidirectional variogram using width of 1 ..."
    > variogramAnalysis@directionalVariograms<-
    + AFM::calculateDirectionalVariograms(AFMImage=AFMImage,
    + AFMImageVariogramAnalysis=variogramAnalysis)
    [1] "calculating directional variograms..."
    [1] "using automatic width of 1"
    Error in `[[<-.data.frame`(`*tmp*`, i, value = c(992, 960, 928, 2694, :
     replacement has 29 rows, data has 15
    Calls: <Anonymous> ... [<-.data.frame -> xpdrows.data.frame -> [[<- -> [[<-.data.frame
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.2.4
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64