CRAN Package Check Results for Package ASMap

Last updated on 2018-08-17 19:49:02 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-2 23.24 375.66 398.90 WARN
r-devel-linux-x86_64-debian-gcc 1.0-2 19.01 361.88 380.89 WARN
r-devel-linux-x86_64-fedora-clang 1.0-2 504.73 WARN
r-devel-linux-x86_64-fedora-gcc 1.0-2 572.93 WARN
r-devel-windows-ix86+x86_64 1.0-2 57.00 552.00 609.00 WARN --no-vignettes
r-patched-linux-x86_64 1.0-2 21.72 416.40 438.12 OK
r-patched-solaris-x86 1.0-2 2201.90 WARN
r-release-linux-x86_64 1.0-2 21.57 424.89 446.46 OK
r-release-windows-ix86+x86_64 1.0-2 57.00 457.00 514.00 OK --no-vignettes
r-release-osx-x86_64 1.0-2 OK
r-oldrel-windows-ix86+x86_64 1.0-2 43.00 493.00 536.00 OK --no-vignettes
r-oldrel-osx-x86_64 1.0-2 WARN

Check Details

Version: 1.0-2
Check: package subdirectories
Result: WARN
    Problems with news in ‘inst/NEWS.Rd’:
     Malformed NEWS.Rd file:
     Chunk starting
     \itemize{
     This is the first documented NEWS release of ASM
     contains no \item.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0-2
Flags: --no-vignettes
Check: package subdirectories
Result: WARN
    Problems with news in 'inst/NEWS.Rd':
     Malformed NEWS.Rd file:
     Chunk starting
     \itemize{
     This is the first documented NEWS release of ASM
     contains no \item.
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in block_exec(params) :
     failed to tidy R code in chunk <setup-lib>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <data0>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mst-df>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <datadf>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mst-cr>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <data>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mst1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mst2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mst3>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mst4>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp3>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp4>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp5>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp6>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp7>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <pp8>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <heat1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <heat2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <prof1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <prof2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <prof3>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in summary.cross(cross) :
     Some markers at the same position on chr 1B1,1D,2B,2D1,3A,3B,3D,4A,5A,5B,5D,6D,7A,7B,7D; use jittermap().
    Warning in block_exec(params) :
     failed to tidy R code in chunk <clones01>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <clones02>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <clones03>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mb1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mb2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mb3>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mb4>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <quick1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <quick2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <sc>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <comb1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <comb2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex3>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex4>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex5>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex6>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex7>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in summary.cross(cross) :
     Some chromosomes > 1000 cM in length; there may be a problem with the genetic map.
     (Perhaps it is in basepairs?)
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex9>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex10>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex11>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex12>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex14>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex16>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex17>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in summary.cross(cross) :
     Some markers at the same position on chr L.1,L.2,L.3,L.4,L.5,L.6,L.7,L.8,L.9; use jittermap().
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex19>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex20>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in heatMap(mapBC6, chr = c("L.3", "L.5", "L.8", "L.9"), lmax = 70) :
     Running est.rf.
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex22>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex23>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex25>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex26>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in summary.cross(cross) :
     Some markers at the same position on chr L.1,L.2,L.3,L.4,L.5,L.6,L.7; use jittermap().
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex28>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <ex29>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <add1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <add2>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <add3>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <add4>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <dist1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <dist3>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <dist4>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <dist5>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <dist6>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     failed to tidy R code in chunk <mvest1>
    reason: Error in loadNamespace(name) : there is no package called 'formatR'
Flavor: r-patched-solaris-x86

Version: 1.0-2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in summary.cross(cross) :
     Some chromosomes > 1000 cM in length; there may be a problem with the genetic map.
     (Perhaps it is in basepairs?)
    Warning in summary.cross(cross) :
     Some markers at the same position on chr L.1,L.2,L.3,L.4,L.5,L.6,L.7,L.8,L.9; use jittermap().
    Warning in heatMap(mapBC6, chr = c("L.3", "L.5", "L.8", "L.9"), lmax = 70) :
     Running est.rf.
    Warning in summary.cross(cross) :
     Some markers at the same position on chr L.1,L.2,L.3,L.4,L.5,L.6,L.7; use jittermap().
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'asmapvignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `titlesec.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.34 \usepackage
     [titles]{tocloft}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64