CRAN Package Check Results for Package Biocomb

Last updated on 2018-06-18 05:49:01 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4 48.24 168.47 216.71 OK
r-devel-linux-x86_64-debian-gcc 0.4 39.38 146.71 186.09 OK
r-devel-linux-x86_64-fedora-clang 0.4 286.48 OK
r-devel-linux-x86_64-fedora-gcc 0.4 274.87 OK
r-devel-windows-ix86+x86_64 0.4 113.00 324.00 437.00 OK
r-patched-linux-x86_64 0.4 46.45 172.97 219.42 OK
r-release-linux-x86_64 0.4 46.92 167.46 214.38 OK
r-release-windows-ix86+x86_64 0.4 109.00 288.00 397.00 OK
r-release-osx-x86_64 0.4 WARN
r-oldrel-windows-ix86+x86_64 0.4 83.00 298.00 381.00 OK
r-oldrel-osx-x86_64 0.4 FAIL

Check Details

Version: 0.4
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-release-osx-x86_64

Version: 0.4
Check: examples
Result: ERROR
    Running examples in ‘Biocomb-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Calculate3D
    > ### Title: Plot the 3D-ROC curve
    > ### Aliases: Calculate3D
    > ### Keywords: feature selection classification HUM values AUC values
    > ### missing values
    >
    > ### ** Examples
    >
    > data(leukemia72)
    > # Basic example
    > # class label must be factor
    > leukemia72[,ncol(leukemia72)]<-as.factor(leukemia72[,ncol(leukemia72)])
    >
    > xdata=leukemia72
    >
    > indexF=names(xdata)[10]
    >
    > indexClass=ncol(xdata)
    > label=levels(xdata[,indexClass])
    > indexLabel=label
    >
    > out=CalculateHUM_seq(xdata,indexF,indexClass,indexLabel)
    > HUM<-out$HUM
    > seq<-out$seq
    > out=CalculateHUM_ROC(xdata,indexF,indexClass,indexLabel,seq)
    > Calculate3D(indexF,out$Sn,out$Sp,out$S3,out$optSn,out$optSp,out$optS3,
    + out$thresholds,HUM,indexLabel[seq])
    Error in rgl.open(useNULL) :
     Java called System.exit(130) requesting R to quit - trying to recover
    Calls: Calculate3D -> clear3d -> .check3d -> open3d -> rgl.open -> .C
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.4
Check: PDF version of manual
Result: FAIL
    
Flavor: r-oldrel-osx-x86_64