CRAN Package Check Results for Package DeLorean

Last updated on 2018-02-24 14:47:52 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.0 5.14 174.23 179.37 WARN
r-devel-linux-x86_64-debian-gcc 1.3.0 4.89 130.01 134.90 WARN
r-devel-linux-x86_64-fedora-clang 1.3.0 463.66 OK
r-devel-linux-x86_64-fedora-gcc 1.3.0 440.42 OK
r-devel-windows-ix86+x86_64 1.3.0 15.00 443.00 458.00 OK
r-patched-linux-x86_64 1.3.0 4.16 176.81 180.97 WARN
r-patched-solaris-x86 1.3.0 157.00 WARN
r-release-linux-x86_64 1.3.0 3.40 176.73 180.13 WARN
r-release-windows-ix86+x86_64 1.3.0 15.00 428.00 443.00 OK
r-release-osx-x86_64 1.3.0 WARN
r-oldrel-windows-ix86+x86_64 1.3.0 10.00 345.00 355.00 OK
r-oldrel-osx-x86_64 1.3.0 OK

Check Details

Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Compiling model
    the number of chains is less than 1; sampling not done
    Saving compiled model to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Compiling model
    the number of chains is less than 1; sampling not done
    Saving compiled model to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Compiling model
    the number of chains is less than 1; sampling not done
    Saving compiled model to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Compiling model
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    Compilation ERROR, function(s)/method(s) not created! "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 39: Error: The function "malloc" must have a prototype.
    "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 148: Error: The function "free" must have a prototype.
    "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 235: Error: The function "free" must have a prototype.
    "/home/ripley/R/Lib32/BH/include/boost/config/compiler/sunpro_cc.hpp", line 117: Warning (Anachronism): Attempt to redefine BOOST_NO_CXX11_RVALUE_REFERENCES without using #undef.
    "/home/ripley/R/Lib32/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h", line 49: Error: Cannot define member of undefined specialization "unary_evaluator<CwiseUnaryOp<UnaryOp, ArgType>, Eigen::internal::IteratorBased>".
    "/home/ripley/R/Lib32/RcppEigen/include/Eigen/src/Spars
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Compiling model
    the number of chains is less than 1; sampling not done
    Saving compiled model to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-linux-x86_64

Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    R2E:scaled:ica:8; time=0.0729999999999933s; LL=-3712.81154349785
    HC:scaled:ica:8; time=0.00399999999999068s; LL=-3713.26968770861
    GW:scaled:ica:8; time=0.00500000000000966s; LL=-3654.18293807542
    OLO:scaled:ica:8; time=0.00499999999999545s; LL=-3584.83725107307
    TSP:unscaled:ica:8; time=0.078000000000003s; LL=-3581.30930511167
    R2E:unscaled:ica:8; time=0.0790000000000077s; LL=-3696.06358967875
    HC:unscaled:ica:8; time=0.00300000000000011s; LL=-3690.2571376739
    GW:unscaled:ica:8; time=0.00699999999999079s; LL=-3672.99273236011
    OLO:unscaled:ica:8; time=0.00400000000000489s; LL=-3702.0299990698
    TSP:scaled:mds:8; time=0.012999999999991s; LL=-3473.97655643982
    R2E:scaled:mds:8; time=0.00900000000000034s; LL=-3539.73235477117
    HC:scaled:mds:8; time=0.00600000000000023s; LL=-3500.35428409702
    GW:scaled:mds:8; time=0.00500000000000966s; LL=-3452.34261568703
    OLO:scaled:mds:8; time=0.00600000000000023s; LL=-3423.46281567446
    TSP:unscaled:mds:8; time=0.007000000000005s; LL=-3385.56717220274
    R2E:unscaled:mds:8; time=0.00999999999999091s; LL=-3444.16799222093
    HC:unscaled:mds:8; time=0.00300000000000011s; LL=-3549.08854950727
    GW:unscaled:mds:8; time=0.00699999999999079s; LL=-3463.30841374902
    OLO:unscaled:mds:8; time=0.00300000000000011s; LL=-3381.45690349794
    Using ordering OLO:unscaled:pca:8; LL=-3381.45690349794
    Using ordering TSP:unscaled:mds:8; LL=-3385.56717220274
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    No VB fits worked.
    Execution halted
Flavor: r-release-osx-x86_64