CRAN Package Check Results for Package DeLorean

Last updated on 2018-08-21 21:51:00 CEST.

Check Details

Version: 1.4.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Rcpp
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Compiling model
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    Compilation ERROR, function(s)/method(s) not created! "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 39: Error: The function "malloc" must have a prototype.
    "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 148: Error: The function "free" must have a prototype.
    "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 235: Error: The function "free" must have a prototype.
    "/tmp/RtmpFcaGRe/RLIBS_95c505d6b7/BH/include/boost/config/compiler/sunpro_cc.hpp", line 117: Warning (Anachronism): Attempt to redefine BOOST_NO_CXX11_RVALUE_REFERENCES without using #undef.
    "/tmp/RtmpFcaGRe/RLIBS_95c505d6b7/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h", line 49: Error: Cannot define member of undefined specialization "unary_evaluator<CwiseUnaryOp<UnaryOp, ArgType>, Eigen::internal::IteratorBased>".
    "/tmp/RtmpFcaGRe/RLIBS_95c505d6
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.4.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    R2E:scaled:ica:8; time=0.0800000000000125s; LL=-3593.64471582112
    HC:scaled:ica:8; time=0.00399999999999068s; LL=-3662.15328961254
    GW:scaled:ica:8; time=0.00400000000000489s; LL=-3650.20497897548
    OLO:scaled:ica:8; time=0.00399999999999068s; LL=-3576.2134155065
    TSP:unscaled:ica:8; time=0.0779999999999887s; LL=-3426.17182650961
    R2E:unscaled:ica:8; time=0.0790000000000077s; LL=-3683.06860248746
    HC:unscaled:ica:8; time=0.00400000000000489s; LL=-3562.3765170823
    GW:unscaled:ica:8; time=0.00499999999999545s; LL=-3580.44912718287
    OLO:unscaled:ica:8; time=0.00399999999999068s; LL=-3654.68336804352
    TSP:scaled:mds:8; time=0.0100000000000051s; LL=-3413.24996658025
    R2E:scaled:mds:8; time=0.00900000000000034s; LL=-3471.08073922714
    HC:scaled:mds:8; time=0.00400000000000489s; LL=-3444.40907635492
    GW:scaled:mds:8; time=0.00399999999999068s; LL=-3392.89738220207
    OLO:scaled:mds:8; time=0.00499999999999545s; LL=-3396.78903939013
    TSP:unscaled:mds:8; time=0.007000000000005s; LL=-3423.93193468305
    R2E:unscaled:mds:8; time=0.0100000000000051s; LL=-3453.54620444163
    HC:unscaled:mds:8; time=0.00399999999999068s; LL=-3407.80036389205
    GW:unscaled:mds:8; time=0.00499999999999545s; LL=-3450.39630140914
    OLO:unscaled:mds:8; time=0.00300000000000011s; LL=-3389.11628329615
    Using ordering TSP:unscaled:ica:4; LL=-3381.26440923208
    Using ordering OLO:unscaled:pca:4; LL=-3383.01932598708
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    No VB fits worked.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.4.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    R2E:scaled:ica:8; time=0.0499999999999972s; LL=-3593.81820623917
    HC:scaled:ica:8; time=0.00300000000000011s; LL=-3533.96536977402
    GW:scaled:ica:8; time=0.00399999999999068s; LL=-3503.21440531928
    OLO:scaled:ica:8; time=0.00300000000000011s; LL=-3603.59290684582
    TSP:unscaled:ica:8; time=0.0489999999999924s; LL=-3516.93850296866
    R2E:unscaled:ica:8; time=0.0739999999999981s; LL=-3527.5074973835
    HC:unscaled:ica:8; time=0.00300000000000011s; LL=-3474.62658161099
    GW:unscaled:ica:8; time=0.00400000000000489s; LL=-3518.20902503071
    OLO:unscaled:ica:8; time=0.00300000000000011s; LL=-3551.52379792059
    TSP:scaled:mds:8; time=0.007000000000005s; LL=-3323.12809781715
    R2E:scaled:mds:8; time=0.00799999999999557s; LL=-3419.88809624051
    HC:scaled:mds:8; time=0.00399999999999068s; LL=-3527.64511000097
    GW:scaled:mds:8; time=0.00399999999999068s; LL=-3527.21434281182
    OLO:scaled:mds:8; time=0.00300000000000011s; LL=-3327.45765879556
    TSP:unscaled:mds:8; time=0.00699999999999079s; LL=-3319.60679863796
    R2E:unscaled:mds:8; time=0.00799999999999557s; LL=-3471.40235719935
    HC:unscaled:mds:8; time=0.00300000000000011s; LL=-3333.55057145953
    GW:unscaled:mds:8; time=0.00400000000000489s; LL=-3340.03235579017
    OLO:unscaled:mds:8; time=0.00300000000000011s; LL=-3345.93050541227
    Using ordering TSP:scaled:pca:8; LL=-3314.25430356305
    Using ordering TSP:scaled:pca:4; LL=-3315.97860754531
    Quitting from lines 145-146 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    No VB fits worked.
    Execution halted
Flavor: r-oldrel-osx-x86_64