CRAN Package Check Results for Package ESEA

Last updated on 2018-02-25 05:47:22 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 3.82 187.78 191.60 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 4.02 137.00 141.02 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 225.62 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 222.48 NOTE
r-devel-windows-ix86+x86_64 1.0 8.00 216.00 224.00 NOTE
r-patched-linux-x86_64 1.0 4.39 201.62 206.01 NOTE
r-patched-solaris-x86 1.0 347.30 NOTE
r-release-linux-x86_64 1.0 3.98 185.33 189.31 NOTE
r-release-windows-ix86+x86_64 1.0 10.00 223.00 233.00 NOTE
r-release-osx-x86_64 1.0 WARN
r-oldrel-windows-ix86+x86_64 1.0 7.00 231.00 238.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: R code for possible problems
Result: NOTE
    ESEA.Main: no visible global function definition for ‘rnorm’
    ESEA.Main: no visible global function definition for ‘sd’
    ESEA.Main: no visible global function definition for ‘p.adjust’
    PlotGlobEdgeCorProfile: no visible global function definition for
     ‘plot’
    PlotGlobEdgeCorProfile: no visible global function definition for
     ‘lines’
    PlotGlobEdgeCorProfile: no visible global function definition for
     ‘colors’
    PlotGlobEdgeCorProfile: no visible global function definition for
     ‘points’
    PlotGlobEdgeCorProfile: no visible global function definition for
     ‘legend’
    PlotGlobEdgeCorProfile: no visible global function definition for
     ‘text’
    PlotPathwayGraph: no visible global function definition for ‘par’
    PlotPathwayGraph: no visible global function definition for ‘plot’
    PlotRunEnrichment: no visible global function definition for ‘plot’
    PlotRunEnrichment: no visible global function definition for ‘lines’
    PlotRunEnrichment: no visible global function definition for ‘colors’
    PlotRunEnrichment: no visible global function definition for ‘text’
    SavePathway2File: no visible global function definition for ‘is’
    calEdgeCorScore: no visible global function definition for ‘na.omit’
    Undefined global functions or variables:
     colors is legend lines na.omit p.adjust par plot points rnorm sd text
    Consider adding
     importFrom("grDevices", "colors")
     importFrom("graphics", "legend", "lines", "par", "plot", "points",
     "text")
     importFrom("methods", "is")
     importFrom("stats", "na.omit", "p.adjust", "rnorm", "sd")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘graph’
Flavor: r-release-osx-x86_64

Version: 1.0
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘ESEA.Rnw’
     ...
    
    > PathwayNetwork <- Results[[2]][[1]]
    
    > SavePathway2File(PathwayNetwork, layout = layout.circle,
    + file = "Graph")
    [1] "...writing to file"
    
     When sourcing ‘ESEA.R’:
    Error: there is no package called ‘graph’
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Attaching package: ‘igraph’
    
    The following objects are masked from ‘package:stats’:
    
     decompose, spectrum
    
    The following object is masked from ‘package:base’:
    
     union
    
    Loading required package: XML
    
    Attaching package: ‘XML’
    
    The following object is masked from ‘package:tools’:
    
     toHTML
    
    Loading required package: parmigene
    
    Error: processing vignette 'ESEA.Rnw' failed with diagnostics:
     chunk 11
    Error in loadNamespace(name) : there is no package called ‘graph’
    Execution halted
Flavor: r-release-osx-x86_64