CRAN Package Check Results for Package FateID

Last updated on 2018-02-23 06:54:49 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 17.96 365.21 383.17 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.0 15.68 269.92 285.60 NOTE
r-devel-windows-ix86+x86_64 0.1.0 39.00 469.00 508.00 OK
r-patched-linux-x86_64 0.1.0 14.31 391.33 405.64 OK
r-patched-solaris-x86 0.1.0 767.30 OK
r-release-linux-x86_64 0.1.0 16.66 395.34 412.00 OK
r-release-windows-ix86+x86_64 0.1.0 52.00 504.00 556.00 OK
r-release-osx-x86_64 0.1.0 ERROR
r-oldrel-windows-ix86+x86_64 0.1.0 31.00 378.00 409.00 OK
r-oldrel-osx-x86_64 0.1.0 ERROR

Check Details

Version: 0.1.0
Check: DESCRIPTION meta-information
Result: NOTE
    Dependence on R version ‘3.3.2’ not with patchlevel 0
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘DESeq2’ ‘destiny’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Missing or unexported objects:
     ‘destiny::DPT’ ‘destiny::random_root’
Flavor: r-oldrel-osx-x86_64

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in ‘FateID-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: dptTraj
    > ### Title: Inferenence of diffusion pseudotime (DPT) for all cells on a
    > ### differentiation trajectory
    > ### Aliases: dptTraj
    >
    > ### ** Examples
    >
    >
    > x <- intestine$x
    > y <- intestine$y
    > tar <- c(6,9,13)
    > fb <- fateBias(x,y,tar,z=NULL,minnr=5,minnrh=10,nbfactor=5,use.dist=FALSE,seed=NULL,nbtree=NULL)
    randomforest 1 15
    randomforest 2 15
    randomforest 3 14
    randomforest 4 13
    randomforest 5 15
    randomforest 6 15
    randomforest 7 13
    randomforest 8 14
    randomforest 9 13
    randomforest 10 13
    randomforest 11 14
    randomforest 12 14
    randomforest 13 15
    randomforest 14 15
    randomforest 15 14
    randomforest 16 13
    randomforest 17 10
    randomforest 18 5
    > dr <- compdr(x,z=NULL,m="cmd",k=2,lle.n=30,dm.sigma=1000,dm.distance="euclidean",tsne.perplexity=30)
    > trc <- dptTraj(x,y,fb,trthr=.25,distance="euclidean",sigma=1000)
    Error: 'random_root' is not an exported object from 'namespace:destiny'
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 137-138 (FateID.Rmd)
    Error: processing vignette 'FateID.Rmd' failed with diagnostics:
    The sigma parameter needs to be NULL, numeric or a 'Sigmas' object, not a 'character'.
    Execution halted
Flavor: r-oldrel-osx-x86_64