CRAN Package Check Results for Package GiANT

Last updated on 2021-02-25 10:47:36 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.1 3.95 61.09 65.04 OK --no-vignettes
r-devel-linux-x86_64-debian-gcc 1.3.1 2.82 45.59 48.41 OK --no-vignettes
r-devel-linux-x86_64-fedora-clang 1.3.1 97.46 OK
r-devel-linux-x86_64-fedora-gcc 1.3.1 88.53 OK
r-devel-windows-ix86+x86_64 1.3.1 5.00 59.00 64.00 OK --no-vignettes
r-patched-linux-x86_64 1.3.1 3.44 57.61 61.05 OK --no-vignettes
r-patched-solaris-x86 1.3.1 107.30 OK --no-vignettes
r-release-linux-x86_64 1.3.1 3.87 58.10 61.97 OK --no-vignettes
r-release-macos-x86_64 1.3.1 ERROR
r-release-windows-ix86+x86_64 1.3.1 19.00 86.00 105.00 OK --no-vignettes
r-oldrel-macos-x86_64 1.3.1 OK
r-oldrel-windows-ix86+x86_64 1.3.1 4.00 77.00 81.00 OK --no-vignettes

Check Details

Version: 1.3.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘GlobalAncova’
Flavor: r-release-macos-x86_64

Version: 1.3.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘GlobalAncova’
Flavor: r-release-macos-x86_64

Version: 1.3.1
Check: examples
Result: ERROR
    Running examples in ‘GiANT-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: GiANT-package
    > ### Title: Enrichment analysis
    > ### Aliases: GiANT
    >
    > ### ** Examples
    >
    > # load data
    > require(GlobalAncova)
    Loading required package: GlobalAncova
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘GlobalAncova’
    > data(vantVeer)
    Warning in data(vantVeer) : data set ‘vantVeer’ not found
    > data(phenodata)
    Warning in data(phenodata) : data set ‘phenodata’ not found
    > data(pathways)
    Warning in data(pathways) : data set ‘pathways’ not found
    >
    > ##################################
    > # Example 1: gene set analysis #
    > ##################################
    > res <- geneSetAnalysis(
    + # parameters for geneSetAnalysis
    + dat = vantVeer,
    + geneSets = pathways[1],
    + analysis = analysis.averageCorrelation(),
    + adjustmentMethod = "fdr",
    + # additional parameters for analysis.averageCorrelation
    + labs = phenodata$metastases,
    + method = "pearson",
    + numSamples = 50)
    Error in geneSetAnalysis(dat = vantVeer, geneSets = pathways[1], analysis = analysis.averageCorrelation(), :
     object 'pathways' not found
    Execution halted
Flavor: r-release-macos-x86_64