CRAN Package Check Results for Package HTSSIP

Last updated on 2018-02-24 14:47:59 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.2 8.00 683.36 691.36 OK --no-vignettes
r-devel-linux-x86_64-debian-gcc 1.3.2 8.16 503.10 511.26 OK --no-vignettes
r-devel-windows-ix86+x86_64 1.3.2 20.00 583.00 603.00 NOTE --no-vignettes
r-patched-linux-x86_64 1.3.2 8.93 204.12 213.05 OK --no-vignettes
r-patched-solaris-x86 1.3.2 1238.50 NOTE
r-release-linux-x86_64 1.3.2 8.42 212.46 220.88 OK --no-vignettes
r-release-windows-ix86+x86_64 1.3.2 25.00 291.00 316.00 NOTE --no-vignettes
r-release-osx-x86_64 1.3.2 ERROR
r-oldrel-windows-ix86+x86_64 1.3.2 15.00 240.00 255.00 ERROR --no-vignettes
r-oldrel-osx-x86_64 1.3.0 ERROR

Check Details

Version: 1.3.2
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 4.0Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3.2
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     data 4.1Mb
     doc 1.1Mb
Flavor: r-patched-solaris-x86

Version: 1.3.2
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘igraph’
     All declared Imports should be used.
Flavor: r-patched-solaris-x86

Version: 1.3.2
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘DESeq2’ ‘phyloseq’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.3.2
Flags: --no-vignettes
Check: tests
Result: ERROR
     Running 'testthat.R' [106s]
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     == testthat results ===========================================================
     OK: 83 SKIPPED: 17 FAILED: 11
     1. Error: Beta diversity from a list of phyloseq objects (@test-BD_ordinations.R#2)
     2. Error: Beta diversity from a list of phyloseq objects (parallel) (@test-BD_ordinations.R#9)
     3. Error: phyloseq sim (@test-HTSSIP_sim.R#59)
     4. Error: phyloseq sim w/ metadata (@test-HTSSIP_sim.R#75)
     5. Error: phyloseq sample_data can be converted to dataframe (@test-Util.R#10)
     6. Error: phyloseq tax_table can be converted to dataframe (@test-Util.R#18)
     7. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#25)
     8. Error: phyloseq_re sample_data can be converted to dataframe (@test-Util.R#35)
     9. Error: phyloseq otu_table can be converted to dataframe (@test-Util.R#48)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.3.0
Check: package dependencies
Result: ERROR
    Package required and available but unsuitable version: ‘phyloseq’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64