CRAN Package Check Results for Package ModelMap

Last updated on 2018-05-25 16:48:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.3.5 15.33 162.11 177.44 OK --no-vignettes
r-devel-linux-x86_64-debian-gcc 3.3.5 14.05 127.69 141.74 OK --no-vignettes
r-devel-linux-x86_64-fedora-clang 3.3.5 419.90 WARN
r-devel-linux-x86_64-fedora-gcc 3.3.5 404.77 WARN
r-devel-windows-ix86+x86_64 3.3.5 21.00 548.00 569.00 OK
r-patched-linux-x86_64 3.3.5 11.78 133.89 145.67 OK --no-vignettes
r-patched-solaris-x86 3.3.5 577.70 WARN
r-release-linux-x86_64 3.3.5 13.16 135.88 149.04 OK --no-vignettes
r-release-windows-ix86+x86_64 3.3.5 27.00 648.00 675.00 OK
r-release-osx-x86_64 3.3.5 FAIL
r-oldrel-windows-ix86+x86_64 3.3.5 20.00 523.00 543.00 OK
r-oldrel-osx-x86_64 3.3.5 NOTE

Check Details

Version: 3.3.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: randomForest
    randomForest 4.6-14
    Type rfNews() to see new features/changes/bug fixes.
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.2-20, (SVN revision 725)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 2.1.3, released 2017/20/01
     Path to GDAL shared files: /usr/share/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493]
     Path to PROJ.4 shared files: (autodetected)
     Linking to sp version: 1.2-7
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx3_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx3_map.img
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4b_map.img
    Warning in file.remove("Rplots.pdf") :
     cannot remove file 'Rplots.pdf', reason 'No such file or directory'
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'VModelMap.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    \UseRawInputEncoding ...tencodingname \@undefined
     \let \DeclareFontEncoding@...
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Missing \endcsname inserted.
    <to be read again>
     \let
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Missing \endcsname inserted.
    <to be read again>
     \let
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Missing \endcsname inserted.
    <to be read again>
     \let
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Undefined contr
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.3.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: randomForest
    randomForest 4.6-14
    Type rfNews() to see new features/changes/bug fixes.
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.2-20, (SVN revision 725)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 2.2.4, released 2018/03/19
     Path to GDAL shared files: /usr/local/share/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ.4 runtime: Rel. 5.0.1, April 1st, 2018, [PJ_VERSION: 501]
     Path to PROJ.4 shared files: (autodetected)
     Linking to sp version: 1.2-7
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx3_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx3_map.img
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4b_map.img
    Warning in file.remove("Rplots.pdf") :
     cannot remove file 'Rplots.pdf', reason 'No such file or directory'
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'VModelMap.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    \UseRawInputEncoding ...tencodingname \@undefined
     \let \DeclareFontEncoding@...
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Missing \endcsname inserted.
    <to be read again>
     \let
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Missing \endcsname inserted.
    <to be read again>
     \let
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Missing \endcsname inserted.
    <to be read again>
     \let
    l.1227 ...itet{vaughan05}, and \citet{reineking06}
     . In a Calibration plot th...
    ! Undefined contr
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-patched-solaris-x86

Version: 3.3.5
Check: re-building of vignette outputs
Result: FAIL
    
Flavor: r-release-osx-x86_64

Version: 3.3.5
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.2-6, (SVN revision 651)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 2.1.3, released 2017/20/01
     Path to GDAL shared files: /Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.4/rgdal/gdal
     Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493]
     Path to PROJ.4 shared files: /Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.4/rgdal/proj
     Linking to sp version: 1.2-4
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'ExploreModelMap.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `a4wide.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.3 \setlength
     {\parskip}{0.7ex plus0.1ex minus0.1ex}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64