Last updated on 2018-08-22 08:48:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 44.16 | 72.56 | 116.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 40.14 | 57.15 | 97.29 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.2 | 155.43 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 151.11 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.2.2 | 94.00 | 118.00 | 212.00 | OK | |
| r-patched-linux-x86_64 | 1.2.2 | 36.57 | 65.93 | 102.50 | OK | |
| r-patched-solaris-x86 | 1.2.2 | 151.40 | OK | |||
| r-release-linux-x86_64 | 1.2.2 | 42.23 | 66.38 | 108.61 | OK | |
| r-release-windows-ix86+x86_64 | 1.2.2 | 134.00 | 112.00 | 246.00 | OK | |
| r-release-osx-x86_64 | 1.2.2 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.2 | 105.00 | 150.00 | 255.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2.2 | ERROR |
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
23: tryCatchList(expr, classes, parentenv, handlers)
24: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
25: test_code(NULL, exprs, env)
26: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
27: force(code)
28: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, { lister$start_file(basename(path)) source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) end_context() })
29: FUN(X[[i]], ...)
30: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
31: force(code)
32: with_reporter(reporter = current_reporter, results <- lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap))
33: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
34: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
35: test_package_dir(package = package, test_path = test_path, filter = filter, reporter = reporter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
36: test_check("NetworkInference")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-osx-x86_64
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
5: withVisible(eval(expr, envir, enclos))
6: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
7: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
8: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
9: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
10: evaluate::evaluate(...)
11: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
12: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
13: block_exec(params)
14: call_block(x)
15: process_group.block(group)
16: process_group(group)
17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
18: process_file(text, output)
19: knit(input, text = text, envir = envir, encoding = encoding, quiet = quiet)
20: knit2html(..., force_v1 = TRUE)
21: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv())
22: vweave(...)
23: engine$weave(file, quiet = quiet, encoding = enc)
24: doTryCatch(return(expr), name, parentenv, handler)
25: tryCatchOne(expr, names, parentenv, handlers[[1L]])
26: tryCatchList(expr, classes, parentenv, handlers)
27: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
28: buildVignettes(dir = "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.5/NetworkInference.Rcheck/vign_test/NetworkInference")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-osx-x86_64
Version: 1.2.2
Check: examples
Result: ERROR
Running examples in ‘NetworkInference-Ex.R’ failed
The error most likely occurred in:
> ### Name: is.diffnet
> ### Title: Is the object of class diffnet?
> ### Aliases: is.diffnet
>
> ### ** Examples
>
>
> data(cascades)
> result <- netinf(cascades, n_edges = 6, params = 1)
Initializing trees...
Getting possible edges...
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Inferring 6 edges...
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
********
*** caught segfault ***
address 0x1700000000, cause 'memory not mapped'
Traceback:
1: .Call(`_NetworkInference_netinf_`, cascade_nodes, cascade_times, n_edges, model, params, quiet, auto_edges, cutoff)
2: netinf_(cascade_nodes = cascade_nodes, cascade_times = cascades$cascade_times, model = model, params = params, n_edges = n_edges, quiet = quiet, auto_edges = auto_edges, cutoff = cutoff)
3: netinf(cascades, n_edges = 6, params = 1)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-osx-x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
24: tryCatchList(expr, classes, parentenv, handlers)
25: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
26: test_code(NULL, exprs, env)
27: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
28: force(code)
29: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, { lister$start_file(basename(path)) source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) end_context() })
30: FUN(X[[i]], ...)
31: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
32: force(code)
33: with_reporter(reporter = current_reporter, results <- lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap))
34: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
35: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
36: test_package_dir(package = package, test_path = test_path, filter = filter, reporter = reporter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
37: test_check("NetworkInference")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-osx-x86_64
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
6: withVisible(eval(expr, envir, enclos))
7: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
8: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
9: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
10: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
11: evaluate::evaluate(...)
12: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
13: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
14: block_exec(params)
15: call_block(x)
16: process_group.block(group)
17: process_group(group)
18: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
19: process_file(text, output)
20: knit(input, text = text, envir = envir, encoding = encoding, quiet = quiet)
21: knit2html(..., force_v1 = TRUE)
22: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv())
23: vweave(...)
24: engine$weave(file, quiet = quiet, encoding = enc)
25: doTryCatch(return(expr), name, parentenv, handler)
26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
27: tryCatchList(expr, classes, parentenv, handlers)
28: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
29: buildVignettes(dir = "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.4/NetworkInference.Rcheck/vign_test/NetworkInference")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-osx-x86_64