CRAN Package Check Results for Package SIBER

Last updated on 2018-01-24 10:48:21 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.3 1.06 132.02 133.08 OK
r-devel-linux-x86_64-debian-gcc 2.1.3 0.74 89.24 89.98 OK
r-devel-linux-x86_64-fedora-clang 2.1.3 146.65 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.3 140.58 NOTE
r-devel-windows-ix86+x86_64 2.1.3 8.00 179.00 187.00 OK
r-patched-linux-x86_64 2.1.3 1.28 134.42 135.70 OK
r-patched-solaris-x86 2.1.3 179.20 NOTE
r-release-linux-x86_64 2.1.3 1.35 133.27 134.62 OK
r-release-windows-ix86+x86_64 2.1.3 4.00 137.00 141.00 OK
r-release-osx-x86_64 2.1.3 NOTE
r-oldrel-windows-ix86+x86_64 2.1.2 9.00 53.00 62.00 ERROR
r-oldrel-osx-x86_64 2.1.3 ERROR

Check Details

Version: 2.1.3
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘dplyr’ ‘ggplot2’ ‘viridis’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64

Version: 2.1.2
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: 'spatstat::overlap.xypolygon'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2.1.2
Check: examples
Result: ERROR
    Running examples in 'SIBER-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: maxLikOverlap
    > ### Title: Calculate the overlap between two ellipses based on the maximum
    > ### likelihood fitted ellipses.
    > ### Aliases: maxLikOverlap
    >
    > ### ** Examples
    >
    > # load in the included demonstration dataset data("demo.siber.data")
    > siber.example <- createSiberObject(demo.siber.data)
    >
    > # The first ellipse is referenced using a character string representation
    > # where in "x.y", "x" is the community, and "y" is the group within that
    > # community.
    > ellipse1 <- "1.2"
    >
    > # Ellipse two is similarly defined: community 1, group3
    > ellipse2 <- "1.3"
    >
    > # the overlap betweeen the corresponding 95% prediction ellipses is given by:
    > ellipse95.overlap <- maxLikOverlap(ellipse1, ellipse2, siber.example,
    + p.interval = 0.95, n = 100)
    Error: 'overlap.xypolygon' is not an exported object from 'namespace:spatstat'
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2.1.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/3.3/SIBER.Rcheck/vign_test/SIBER") :
     Files named as vignettes but with no recognized vignette engine:
     'vignettes/test-nonnumeric-community-labels.Rmd'
     'vignettes/test-nonnumeric-group-labels.Rmd'
    (Is a VignetteBuilder field missing?)
    Quitting from lines 89-115 (Ellipse-Overlap.Rmd)
    Error: processing vignette 'Ellipse-Overlap.Rmd' failed with diagnostics:
    'overlap.xypolygon' is not an exported object from 'namespace:spatstat'
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2.1.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-osx-x86_64