CRAN Package Check Results for Package SeqFeatR

Last updated on 2021-01-25 00:48:10 CET.

Check Details

Version: 0.3.1
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'assocpointpair_result.csv' 'foundereffectfinder_result.csv'
     'getfreqs_result.csv' 'getfreqs_result.png' 'orPlot.pdf1_1.pdf'
     'orPlot.pdf2_1.pdf' 'orPlot.pdf3_1.pdf' 'orPlot.pdf4_1.pdf'
     'orPlot.pdf5_1.pdf' 'orPlot.pdf6_1.pdf' 'orPlot.pdf7_1.pdf'
     'orPlot.pdf8_1.pdf' 'q-values_result.csv' 'rewritetuple_result.csv'
     'tartan_plot.pdf' 'vispair_plot.pdf' 'vispairfeat_plot.pdf'
     'volcano_plot.pdf'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘widgetTools’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-x86_64

Version: 0.3.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: package ‘S4Vectors’ was built under R version 3.6.1
     Warning: package ‘IRanges’ was built under R version 3.6.1
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: dependencies in R code
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: S3 generic/method consistency
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: replacement functions
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: foreign function calls
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: R code for possible problems
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: for missing documentation entries
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: for code/documentation mismatches
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 0.3.1
Check: Rd \usage sections
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64