CRAN Package Check Results for Package SpaDES.core

Last updated on 2018-05-23 09:47:35 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.1 29.24 370.15 399.39 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.1 0.53 1.78 2.31 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.1 485.36 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.1 477.84 ERROR
r-devel-windows-ix86+x86_64 0.1.1 57.00 377.00 434.00 ERROR
r-patched-linux-x86_64 0.1.1 27.32 345.96 373.28 ERROR
r-patched-solaris-x86 0.1.1 759.40 ERROR
r-release-linux-x86_64 0.1.1 28.11 357.41 385.52 ERROR
r-release-windows-ix86+x86_64 0.1.1 63.00 464.00 527.00 ERROR
r-release-osx-x86_64 0.1.1 ERROR
r-oldrel-windows-ix86+x86_64 0.1.1 65.00 531.00 596.00 ERROR
r-oldrel-osx-x86_64 0.1.1 WARN

Additional issues

rcnst

Check Details

Version: 0.1.1
Check: for unstated dependencies in ‘tests’
Result: WARN
    '::' or ':::' import not declared from: ‘microbenchmark’
    'library' or 'require' call not declared from: ‘magrittr’
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘test-all.R’ [162s/262s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     ── 1. Failure: simList object initializes correctly (@test-simList.R#17) ──────────────────────────
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.1
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘quickPlot’ ‘DiagrammeR’ ‘dplyr’
    
    Package suggested but not available for checking: ‘SpaDES.tools’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.1
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘sp’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘test-all.R’ [191s/228s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     ── 1. Failure: simList object initializes correctly (@test-simList.R#17) ──────────────────────────
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘test-all.R’ [185s/217s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     ── 1. Failure: simList object initializes correctly (@test-simList.R#17) ──────────────────────────
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.1
Check: tests
Result: ERROR
     Running 'test-all.R' [156s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     -- 1. Failure: simList object initializes correctly (@test-simList.R#17) --------------------------
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     == testthat results ===========================================================
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘test-all.R’ [162s/212s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     ── 1. Failure: simList object initializes correctly (@test-simList.R#17) ──────────────────────────
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘test-all.R’ [370s/505s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     ── 1. Failure: simList object initializes correctly (@test-simList.R#17) ──────────────────────────
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    Loading required package: RColorBrewer
    Loading required package: raster
    Loading required package: sp
    Loading required package: grid
    
    Attaching package: 'grid'
    
    The following object is masked from 'package:quickPlot':
    
     gpar
    
    Quitting from lines 357-361 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘test-all.R’ [173s/225s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     ── 1. Failure: simList object initializes correctly (@test-simList.R#17) ──────────────────────────
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running 'test-all.R' [146s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     -- 1. Failure: simList object initializes correctly (@test-simList.R#17) --------------------------
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     == testthat results ===========================================================
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running ‘test-all.R’ [275s/483s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     ── 1. Error: 3 levels of parent and child modules load and show correctly (@test
     At optimal_modularity.c:85 : GLPK is not available, Unimplemented function call
     1: moduleGraph(mySim, FALSE) at testthat/test-module-deps-methods.R:201
     2: moduleGraph(mySim, FALSE)
     3: cluster_optimal(grph)
    
     Using cached copy of burn event in fireSpread module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 344 SKIPPED: 33 FAILED: 1
     1. Error: 3 levels of parent and child modules load and show correctly (@test-module-deps-methods.R#201)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    Loading required package: RColorBrewer
    Loading required package: raster
    Loading required package: sp
    Loading required package: grid
    
    Attaching package: 'grid'
    
    The following object is masked from 'package:quickPlot':
    
     gpar
    
    Quitting from lines 357-361 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.1
Check: tests
Result: ERROR
     Running 'test-all.R' [167s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
     Using cached copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module
     -- 1. Failure: simList object initializes correctly (@test-simList.R#17) --------------------------
     length(out) not equal to 75.
     1/1 mismatches
     [1] 73 - 75 == -2
    
     Using cached copy of burn event in fireSpread module
     == testthat results ===========================================================
     OK: 349 SKIPPED: 33 FAILED: 1
     1. Failure: simList object initializes correctly (@test-simList.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64