CRAN Package Check Results for Package TANDEM

Last updated on 2019-11-22 03:49:30 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 ERROR
r-devel-linux-x86_64-debian-gcc 1.0.2 1.88 21.53 23.41 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.2 33.93 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0.2 34.26 ERROR
r-devel-windows-ix86+x86_64 1.0.2 8.00 50.00 58.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 1.0.2 5.00 37.00 42.00 ERROR
r-patched-linux-x86_64 1.0.2 1.33 24.64 25.97 ERROR
r-patched-solaris-x86 1.0.2 53.90 ERROR
r-release-linux-x86_64 1.0.2 1.74 24.47 26.21 ERROR
r-release-windows-ix86+x86_64 1.0.2 7.00 38.00 45.00 ERROR
r-release-osx-x86_64 1.0.2 OK
r-oldrel-windows-ix86+x86_64 1.0.2 2.00 77.00 79.00 OK
r-oldrel-osx-x86_64 1.0.2 OK

Check Details

Version: 1.0.2
Check: dependencies in R code
Result: NOTE
    Missing or unexported objects:
     'glmnet::coef.cv.glmnet' 'glmnet::predict.cv.glmnet'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.0.2
Check: examples
Result: ERROR
    Running examples in 'TANDEM-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: coef.tandem
    > ### Title: Returns the regression coefficients from a TANDEM fit
    > ### Aliases: coef.tandem
    >
    > ### ** Examples
    >
    > # unpack example data
    > x = example_data$x
    > y = example_data$y
    > upstream = example_data$upstream
    >
    > # fit a tandem model, determine the coefficients and create a prediction
    > fit = tandem(x, y, upstream, alpha=0.5)
    Error: 'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'my-vignette.Rmd' using rmarkdown
    Loading required package: Matrix
    Loaded glmnet 3.0-1
    
    Quitting from lines 27-31 (my-vignette.Rmd)
    Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
    'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    --- failed re-building 'my-vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'my-vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.2
Check: examples
Result: ERROR
    Running examples in ‘TANDEM-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: coef.tandem
    > ### Title: Returns the regression coefficients from a TANDEM fit
    > ### Aliases: coef.tandem
    >
    > ### ** Examples
    >
    > # unpack example data
    > x = example_data$x
    > y = example_data$y
    > upstream = example_data$upstream
    >
    > # fit a tandem model, determine the coefficients and create a prediction
    > fit = tandem(x, y, upstream, alpha=0.5)
    Error: 'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-solaris-x86, r-release-windows-ix86+x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘my-vignette.Rmd’ using rmarkdown
    Loading required package: Matrix
    Loaded glmnet 3.0-1
    
    Quitting from lines 27-31 (my-vignette.Rmd)
    Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
    'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    --- failed re-building ‘my-vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘my-vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘my-vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Matrix
    Loaded glmnet 3.0-1
    
    Quitting from lines 27-31 (my-vignette.Rmd)
    Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
    'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    --- failed re-building ‘my-vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘my-vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86