CRAN Package Check Results for Package TunePareto

Last updated on 2018-05-27 12:48:23 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4 3.56 30.47 34.03 ERROR
r-devel-linux-x86_64-debian-gcc 2.4 3.29 23.24 26.53 ERROR
r-devel-linux-x86_64-fedora-clang 2.4 48.49 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4 44.73 NOTE
r-devel-windows-ix86+x86_64 2.4 7.00 68.00 75.00 NOTE
r-patched-linux-x86_64 2.4 3.54 29.41 32.95 ERROR
r-patched-solaris-x86 2.4 61.60 NOTE
r-release-linux-x86_64 2.4 2.48 29.31 31.79 ERROR
r-release-windows-ix86+x86_64 2.4 10.00 85.00 95.00 NOTE
r-release-osx-x86_64 2.4 NOTE
r-oldrel-windows-ix86+x86_64 2.4 11.00 54.00 65.00 NOTE
r-oldrel-osx-x86_64 2.4 NOTE

Check Details

Version: 2.4
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘gsl’ ‘igraph’ ‘snowfall’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     predict.TuneParetoModel print.TuneParetoClassifier
     print.TuneParetoModel print.TuneParetoResult
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.4
Check: R code for possible problems
Result: NOTE
    crossValidation : <anonymous> : <anonymous>: no visible binding for
     global variable ‘predict’
    cvErrorVariance : <anonymous>: no visible global function definition
     for ‘var’
    internal.plotParetoFronts2D: no visible global function definition for
     ‘plot’
    internal.plotParetoFronts2D: no visible global function definition for
     ‘abline’
    internal.plotParetoFronts2D: no visible global function definition for
     ‘lines’
    internal.plotParetoFronts2D: no visible global function definition for
     ‘text’
    latinHypercube : <anonymous> : <anonymous>: no visible global function
     definition for ‘runif’
    mutate : <anonymous>: no visible global function definition for ‘rnorm’
    mutate : <anonymous>: no visible global function definition for ‘runif’
    plotDominationGraph: no visible global function definition for
     ‘graph.adjacency’
    plotDominationGraph: no visible binding for global variable ‘plot’
    plotDominationGraph: no visible global function definition for
     ‘layout.norm’
    plotDominationGraph: no visible global function definition for ‘par’
    plotDominationGraph: no visible global function definition for ‘xinch’
    plotDominationGraph: no visible global function definition for ‘points’
    plotDominationGraph: no visible global function definition for ‘legend’
    plotObjectivePairs: no visible global function definition for ‘pairs’
    predict.TuneParetoModel: no visible global function definition for
     ‘as.formula’
    reclassification: no visible binding for global variable ‘predict’
    removeOverlaps: no visible global function definition for ‘par’
    removeOverlaps: no visible global function definition for ‘strheight’
    removeOverlaps: no visible global function definition for ‘strwidth’
    sampleCombinations: no visible global function definition for ‘runif’
    sampleCombinations: no visible global function definition for
     ‘qrng_alloc’
    sampleCombinations: no visible global function definition for
     ‘qrng_get’
    trainTuneParetoClassifier: no visible global function definition for
     ‘as.formula’
    tunePareto: no visible global function definition for ‘sfLibrary’
    tunePareto : <anonymous>: no visible global function definition for
     ‘sfLibrary’
    tunePareto: no visible global function definition for ‘runif’
    tunePareto : calculateObjectiveVals: no visible global function
     definition for ‘runif’
    tunePareto : <anonymous>: no visible global function definition for
     ‘runif’
    tunePareto: no visible global function definition for ‘sfExport’
    tunePareto: no visible global function definition for ‘sfLapply’
    tunePareto.NaiveBayes: no visible binding for global variable
     ‘NaiveBayes’
    tunePareto.NaiveBayes : <anonymous>: no visible global function
     definition for ‘predict’
    Undefined global functions or variables:
     NaiveBayes abline as.formula graph.adjacency layout.norm legend lines
     pairs par plot points predict qrng_alloc qrng_get rnorm runif
     sfExport sfLapply sfLibrary strheight strwidth text var xinch
    Consider adding
     importFrom("graphics", "abline", "legend", "lines", "pairs", "par",
     "plot", "points", "strheight", "strwidth", "text", "xinch")
     importFrom("stats", "as.formula", "predict", "rnorm", "runif", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.4
Check: compiled code
Result: NOTE
    File ‘TunePareto/libs/TunePareto.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.4
Check: examples
Result: ERROR
    Running examples in ‘TunePareto-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: predict.TuneParetoModel
    > ### Title: Prediction method for TuneParetoClassifier objects
    > ### Aliases: predict.TuneParetoModel
    > ### Keywords: prediction
    >
    > ### ** Examples
    >
    > # train an SVM classifier
    > cl <- tunePareto.svm()
    Loading required package: e1071
    > tr <- trainTuneParetoClassifier(cl,
    + iris[,-ncol(iris)],
    + iris[,ncol(iris)],
    + cost=0.001)
    >
    > # re-apply the classifier to predict the training data
    > print(iris[,ncol(iris)])
     [1] setosa setosa setosa setosa setosa setosa
     [7] setosa setosa setosa setosa setosa setosa
     [13] setosa setosa setosa setosa setosa setosa
     [19] setosa setosa setosa setosa setosa setosa
     [25] setosa setosa setosa setosa setosa setosa
     [31] setosa setosa setosa setosa setosa setosa
     [37] setosa setosa setosa setosa setosa setosa
     [43] setosa setosa setosa setosa setosa setosa
     [49] setosa setosa versicolor versicolor versicolor versicolor
     [55] versicolor versicolor versicolor versicolor versicolor versicolor
     [61] versicolor versicolor versicolor versicolor versicolor versicolor
     [67] versicolor versicolor versicolor versicolor versicolor versicolor
     [73] versicolor versicolor versicolor versicolor versicolor versicolor
     [79] versicolor versicolor versicolor versicolor versicolor versicolor
     [85] versicolor versicolor versicolor versicolor versicolor versicolor
     [91] versicolor versicolor versicolor versicolor versicolor versicolor
     [97] versicolor versicolor versicolor versicolor virginica virginica
    [103] virginica virginica virginica virginica virginica virginica
    [109] virginica virginica virginica virginica virginica virginica
    [115] virginica virginica virginica virginica virginica virginica
    [121] virginica virginica virginica virginica virginica virginica
    [127] virginica virginica virginica virginica virginica virginica
    [133] virginica virginica virginica virginica virginica virginica
    [139] virginica virginica virginica virginica virginica virginica
    [145] virginica virginica virginica virginica virginica virginica
    Levels: setosa versicolor virginica
    > print(predict(tr, iris[,-ncol(iris)]))
    Error in UseMethod("predict") :
     no applicable method for 'predict' applied to an object of class "TuneParetoModel"
    Calls: print -> predict
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gsl’
Flavor: r-oldrel-osx-x86_64