CRAN Package Check Results for Package XGR

Last updated on 2018-02-18 04:46:53 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1 35.64 353.51 389.15 ERROR
r-devel-linux-x86_64-debian-gcc 1.1.1 33.96 282.56 316.52 ERROR
r-devel-windows-ix86+x86_64 1.1.1 46.00 308.00 354.00 OK
r-patched-linux-x86_64 1.1.1 24.28 345.80 370.08 OK
r-patched-solaris-x86 1.1.1 3.90 ERROR
r-release-linux-x86_64 1.1.1 25.04 343.66 368.70 OK
r-release-windows-ix86+x86_64 1.1.1 68.00 340.00 408.00 OK
r-release-osx-x86_64 1.1.1 ERROR
r-oldrel-windows-ix86+x86_64 1.1.1 1.00 6.00 7.00 ERROR
r-oldrel-osx-x86_64 1.0.10 OK

Check Details

Version: 1.1.1
Check: examples
Result: ERROR
    Running examples in ‘XGR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: ImmunoBase
    > ### Title: Immune-disease associated variants, regions and genes from
    > ### ImmunoBase (hg19)
    > ### Aliases: ImmunoBase
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > ImmunoBase <- xRDataLoader(RData.customised='ImmunoBase')
    'ImmunoBase' (from http://galahad.well.ox.ac.uk/bigdata/ImmunoBase.RData) has been loaded into the working environment (at 2018-02-16 06:36:48)
    > names(ImmunoBase)
     [1] "AA" "AS" "ATD" "CEL" "CRO" "IBD" "IGE" "JIA" "MS" "NAR" "PBC" "PSC"
    [13] "PSO" "RA" "SJO" "SLE" "SSC" "T1D" "UC" "VIT"
    > str(ImmunoBase$AS)
    List of 5
     $ disease : chr "Ankylosing Spondylitis (AS)"
     $ variants :Error in FUN(X[[i]], ...) :
     no slot of name "elementType" for this object of class "GRanges"
    Calls: str ... <Anonymous> -> str -> str.default -> sapply -> lapply -> FUN
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.1
Check: examples
Result: ERROR
    Running examples in ‘XGR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: ImmunoBase
    > ### Title: Immune-disease associated variants, regions and genes from
    > ### ImmunoBase (hg19)
    > ### Aliases: ImmunoBase
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > ImmunoBase <- xRDataLoader(RData.customised='ImmunoBase')
    'ImmunoBase' (from http://galahad.well.ox.ac.uk/bigdata/ImmunoBase.RData) has been loaded into the working environment (at 2018-02-17 17:37:59)
    > names(ImmunoBase)
     [1] "AA" "AS" "ATD" "CEL" "CRO" "IBD" "IGE" "JIA" "MS" "NAR" "PBC" "PSC"
    [13] "PSO" "RA" "SJO" "SLE" "SSC" "T1D" "UC" "VIT"
    > str(ImmunoBase$AS)
    List of 5
     $ disease : chr "Ankylosing Spondylitis (AS)"
     $ variants :Error in FUN(X[[i]], ...) :
     no slot of name "elementType" for this object of class "GRanges"
    Calls: str ... <Anonymous> -> str -> str.default -> sapply -> lapply -> FUN
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘GenomicScores’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-patched-solaris-x86, r-oldrel-windows-ix86+x86_64

Version: 1.1.1
Check: package dependencies
Result: ERROR
    Packages required but not available:
     ‘dnet’ ‘GenomicRanges’ ‘supraHex’ ‘rtracklayer’ ‘GenomicScores’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64