CRAN Package Check Results for Package agridat

Last updated on 2018-02-20 07:47:58 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.13 7.76 164.59 172.35 OK
r-devel-linux-x86_64-debian-gcc 1.13 4.99 139.29 144.28 OK
r-devel-linux-x86_64-fedora-clang 1.13 221.89 OK
r-devel-linux-x86_64-fedora-gcc 1.13 216.16 OK
r-devel-windows-ix86+x86_64 1.13 15.00 174.00 189.00 OK
r-patched-linux-x86_64 1.13 8.01 221.83 229.84 OK
r-patched-solaris-x86 1.13 310.10 OK
r-release-linux-x86_64 1.13 6.69 222.30 228.99 OK
r-release-windows-ix86+x86_64 1.13 23.00 328.00 351.00 OK
r-release-osx-x86_64 1.13 OK
r-oldrel-windows-ix86+x86_64 1.13 33.00 120.00 153.00 ERROR
r-oldrel-osx-x86_64 1.13 OK

Check Details

Version: 1.13
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'gge'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.13
Check: examples
Result: ERROR
    Running examples in 'agridat-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: crossa.wheat
    > ### Title: Multi-environment trial of wheat for 18 genotypes at 25
    > ### locations
    > ### Aliases: crossa.wheat
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    >
    > data(crossa.wheat)
    > dat <- crossa.wheat
    >
    > # AMMI biplot. Fig 3 of Crossa et al.
    > if(require(agricolae)){
    + m1 <- with(dat, AMMI(E=loc, G=gen, R=1, Y=yield))
    + b1 <- m1$biplot[,1:4]
    + b1$PC1 <- -1 * b1$PC1 # Flip vertical
    + plot(b1$yield, b1$PC1, cex=0.0,
    + text(b1$yield, b1$PC1, cex=.5, labels=row.names(b1),col="brown"),
    + main="crossa.wheat AMMI biplot", xlab="Average yield", ylab="PC1", frame=TRUE)
    + mn <- mean(b1$yield)
    + abline(h=0, v=mn, col='wheat')
    +
    + g1 <- subset(b1,type=="GEN")
    + text(g1$yield, g1$PC1, rownames(g1), col="darkgreen", cex=.5)
    +
    + e1 <- subset(b1,type=="ENV")
    + arrows(mn, 0,
    + 0.95*(e1$yield - mn) + mn, 0.95*e1$PC1,
    + col= "brown", lwd=1.8,length=0.1)
    + }
    Loading required package: agricolae
    >
    > # GGB example
    > library(agridat)
    > data(crossa.wheat)
    > dat2 <- crossa.wheat
    >
    > # FIXME: The loc grouping is now in the data
    >
    > # Define mega-environment groups of locations
    > dat2$eg <- ifelse(is.element(dat2$loc,
    + c("KN","NB","PA","BJ","IL","TC",
    + "JM","PI","AS","ID","SC","SS",
    + "SJ","MS","MG","MM")), "Grp1", "Grp2")
    >
    > library(gge)
    Error in library(gge) : there is no package called 'gge'
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.13
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 44-53 (agridat_examples.Rmd)
    Error: processing vignette 'agridat_examples.Rmd' failed with diagnostics:
    there is no package called 'gge'
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64