CRAN Package Check Results for Package biospear

Last updated on 2021-06-23 22:54:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 27.98 230.41 258.39 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 23.18 165.71 188.89 OK
r-devel-linux-x86_64-fedora-clang 1.0.2 315.81 OK
r-devel-linux-x86_64-fedora-gcc 1.0.2 297.10 OK
r-devel-windows-x86_64 1.0.2 46.00 240.00 286.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.0.2 ERROR
r-patched-linux-x86_64 1.0.2 26.24 213.14 239.38 OK
r-patched-solaris-x86 1.0.2 421.70 ERROR
r-release-linux-x86_64 1.0.2 28.23 214.34 242.57 OK
r-release-macos-arm64 1.0.2 ERROR
r-release-macos-x86_64 1.0.2 OK
r-release-windows-ix86+x86_64 1.0.2 52.00 253.00 305.00 OK
r-oldrel-macos-x86_64 1.0.2 OK

Check Details

Version: 1.0.2
Check: package dependencies
Result: ERROR
    Packages required but not available: 'devtools', 'plsRcox'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.2
Check: examples
Result: ERROR
    Running examples in ‘biospear-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: BMsel
    > ### Title: Biomarker selection in a Cox regression model
    > ### Aliases: BMsel summary.resBMsel
    > ### Keywords: survival biomarker selection prognostic interactions
    >
    > ### ** Examples
    >
    > ########################################
    > # Simulated data set
    > ########################################
    >
    > ## Low calculation time
    > set.seed(654321)
    > sdata <- simdata(
    + n = 500, p = 20, q.main = 3, q.inter = 0,
    + prob.tt = 0.5, alpha.tt = 0,
    + beta.main = -0.8,
    + b.corr = 0.6, b.corr.by = 4,
    + m0 = 5, wei.shape = 1, recr = 4, fu = 2,
    + timefactor = 1)
    >
    > resBM <- BMsel(
    + data = sdata,
    + method = c("lasso", "lasso-pcvl"),
    + inter = FALSE,
    + folds = 5)
    
    Computing selection with method: lasso
    Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
    Warning in getcoef(fit, nvars, nx, vnames) :
     an empty model has been returned; probably a convergence issue
    Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
    Warning in getcoef(fit, nvars, nx, vnames) :
     an empty model has been returned; probably a convergence issue
    Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
    Warning in getcoef(fit, nvars, nx, vnames) :
     an empty model has been returned; probably a convergence issue
    Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
    Warning in getcoef(fit, nvars, nx, vnames) :
     an empty model has been returned; probably a convergence issue
    Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
    Warning in getcoef(fit, nvars, nx, vnames) :
     an empty model has been returned; probably a convergence issue
    Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
    Warning in getcoef(fit, nvars, nx, vnames) :
     an empty model has been returned; probably a convergence issue
    Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
    Warning in getcoef(fit, nvars, nx, vnames) :
     an empty model has been returned; probably a convergence issue
    Error in coxnet(xd, is.sparse, ix, jx, y, weights, offset, alpha, nobs, :
     NA/NaN/Inf in foreign function call (arg 16)
    Calls: BMsel -> lapply -> FUN -> <Anonymous> -> glmnet -> coxnet
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘plsRcox’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64