Last updated on 2021-01-23 23:47:10 CET.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 1.1.0 | 720.57 | 339.62 | 1060.19 | OK | |
r-devel-linux-x86_64-debian-gcc | 1.1.0 | 466.15 | 214.28 | 680.43 | OK | |
r-devel-linux-x86_64-fedora-clang | 1.1.0 | 1488.15 | NOTE | |||
r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 1350.79 | OK | |||
r-devel-windows-ix86+x86_64 | 1.1.0 | 1476.00 | 434.00 | 1910.00 | NOTE | |
r-patched-linux-x86_64 | 1.1.0 | 557.12 | 295.11 | 852.23 | OK | |
r-patched-solaris-x86 | 1.1.0 | 876.90 | WARN | |||
r-release-linux-x86_64 | 1.1.0 | 551.40 | 293.90 | 845.30 | OK | |
r-release-macos-x86_64 | 1.1.0 | NOTE | ||||
r-release-windows-ix86+x86_64 | 1.1.0 | 1428.00 | 430.00 | 1858.00 | NOTE | |
r-oldrel-macos-x86_64 | 1.1.0 | NOTE | ||||
r-oldrel-windows-ix86+x86_64 | 1.1.0 | 1194.00 | 451.00 | 1645.00 | NOTE |
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 40.3Mb
sub-directories of 1Mb or more:
doc 2.2Mb
libs 37.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘bssm.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘bssm.Rmd’
Segmentation Fault - core dumped
--- re-building ‘growth_model.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
CC: Warning: Optimizer level changed from 0 to 3 to support parallelized code.
*** caught segfault ***
address 5c7, cause 'memory not mapped'
Traceback:
1: ekf_nlg(t(model$y), model$Z, model$H, model$T, model$R, model$Z_gn, model$T_gn, model$a1, model$P1, model$theta, model$log_prior_pdf, model$known_params, model$known_tv_params, model$n_states, model$n_etas, as.integer(model$time_varying), iekf_iter, default_update_fn, default_prior_fn)
2: ekf(model)
3: eval(expr, envir, enclos)
4: eval(expr, envir, enclos)
5: withVisible(eval(expr, envir, enclos))
6: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
7: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
8: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
9: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
10: evaluate::evaluate(...)
11: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
12: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
13: block_exec(params)
14: call_block(x)
15: process_group.block(group)
16: process_group(group)
17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
18: process_file(text, output)
19: knit(input, text = text, envir = envir, quiet = quiet)
20: knit2html(..., force_v1 = TRUE)
21: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
22: vweave(...)
23: engine$weave(file, quiet = quiet, encoding = enc)
24: doTryCatch(return(expr), name, parentenv, handler)
25: tryCatchOne(expr, names, parentenv, handlers[[1L]])
26: tryCatchList(expr, classes, parentenv, handlers)
27: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
28: tools:::.buildOneVignette("growth_model.Rmd", "/home/ripley/R/packages/tests32/bssm.Rcheck/vign_test/bssm", TRUE, FALSE, "growth_model", "UTF-8", "/tmp/Rtmpn7ai1K/working_dir/RtmpNKayYo/file1d933bff7a13.rds")
An irrecoverable exception occurred. R is aborting now ...
--- re-building ‘psi_pf.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘psi_pf.Rmd’
SUMMARY: processing the following file failed:
‘growth_model.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86