CRAN Package Check Results for Package caRpools

Last updated on 2018-05-27 10:50:03 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.83 5.95 51.25 57.20 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc 0.83 5.83 39.87 45.70 OK --no-examples --no-tests --no-vignettes
r-devel-windows-ix86+x86_64 0.83 11.00 73.00 84.00 OK --install=fake
r-patched-linux-x86_64 0.83 7.66 46.98 54.64 OK --no-examples --no-tests --no-vignettes
r-release-linux-x86_64 0.83 7.76 47.20 54.96 OK --no-examples --no-tests --no-vignettes
r-release-windows-ix86+x86_64 0.83 15.00 57.00 72.00 OK --install=fake
r-release-osx-x86_64 0.83 ERROR
r-oldrel-windows-ix86+x86_64 0.83 8.00 70.00 78.00 OK --install=fake
r-oldrel-osx-x86_64 0.83 ERROR

Check Details

Version: 0.83
Check: examples
Result: ERROR
    Running examples in ‘caRpools-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: carpools.hit.overview
    > ### Title: Analysis: Analysis of pooled CRISPR screening data using a
    > ### Wilcoxon Test
    > ### Aliases: carpools.hit.overview
    > ### Keywords: ~Analysis
    >
    > ### ** Examples
    >
    > data(caRpools)
    >
    > data.wilcox = stat.wilcox(untreated.list = list(CONTROL1, CONTROL2),
    + treated.list = list(TREAT1,TREAT2), namecolumn=1, fullmatchcolumn=2,
    + normalize=TRUE, norm.fun=median, sorting=FALSE, controls="random",
    + control.picks=NULL)
    >
    >
    > data.deseq = stat.DESeq(untreated.list = list(CONTROL1, CONTROL2),
    + treated.list = list(TREAT1,TREAT2), namecolumn=1,
    + fullmatchcolumn=2, extractpattern=expression("^(.+?)(_.+)"),
    + sorting=FALSE, filename.deseq = "ANALYSIS-DESeq2-sgRNA.tab",
    + fitType="parametric")
    Error in `rownames<-`(`*tmp*`, value = colnames(countData)) :
     duplicate rownames not allowed
    Calls: stat.DESeq -> <Anonymous> -> rownames<- -> rownames<-
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.83
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 1875-1881 (CaRpools.Rmd)
    Error: processing vignette 'CaRpools.Rmd' failed with diagnostics:
    duplicate rownames not allowed
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.83
Check: examples
Result: ERROR
    Running examples in ‘caRpools-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: carpools.hit.overview
    > ### Title: Analysis: Analysis of pooled CRISPR screening data using a
    > ### Wilcoxon Test
    > ### Aliases: carpools.hit.overview
    > ### Keywords: ~Analysis
    >
    > ### ** Examples
    >
    > data(caRpools)
    >
    > data.wilcox = stat.wilcox(untreated.list = list(CONTROL1, CONTROL2),
    + treated.list = list(TREAT1,TREAT2), namecolumn=1, fullmatchcolumn=2,
    + normalize=TRUE, norm.fun=median, sorting=FALSE, controls="random",
    + control.picks=NULL)
    >
    >
    > data.deseq = stat.DESeq(untreated.list = list(CONTROL1, CONTROL2),
    + treated.list = list(TREAT1,TREAT2), namecolumn=1,
    + fullmatchcolumn=2, extractpattern=expression("^(.+?)(_.+)"),
    + sorting=FALSE, filename.deseq = "ANALYSIS-DESeq2-sgRNA.tab",
    + fitType="parametric")
    Error in `rownames<-`(`*tmp*`, value = c("CTRL", "CTRL", "TREAT", "TREAT" :
     duplicate rownames not allowed
    Calls: stat.DESeq -> <Anonymous> -> rownames<- -> rownames<-
    Execution halted
Flavor: r-oldrel-osx-x86_64