CRAN Package Check Results for Package data.tree

Last updated on 2018-08-16 16:52:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.6 6.75 96.86 103.61 ERROR
r-devel-linux-x86_64-debian-gcc 0.7.6 6.06 73.99 80.05 ERROR
r-devel-linux-x86_64-fedora-clang 0.7.6 131.97 OK
r-devel-linux-x86_64-fedora-gcc 0.7.6 129.91 OK
r-devel-windows-ix86+x86_64 0.7.6 24.00 187.00 211.00 OK
r-patched-linux-x86_64 0.7.6 5.97 85.04 91.01 ERROR
r-patched-solaris-x86 0.7.6 177.50 WARN
r-release-linux-x86_64 0.7.6 5.59 84.22 89.81 ERROR
r-release-windows-ix86+x86_64 0.7.6 21.00 161.00 182.00 OK
r-release-osx-x86_64 0.7.6 WARN
r-oldrel-windows-ix86+x86_64 0.7.6 18.00 183.00 201.00 OK
r-oldrel-osx-x86_64 0.7.6 WARN

Check Details

Version: 0.7.6
Check: examples
Result: ERROR
    Running examples in ‘data.tree-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: GetPhyloNr
    > ### Title: Determine the number a 'Node' has after conversion to a phylo
    > ### object
    > ### Aliases: GetPhyloNr
    >
    > ### ** Examples
    >
    > library(ape)
    > library(data.tree)
    > data(acme)
    > ap <- as.phylo(acme)
    Error in UseMethod("as.phylo") :
     no applicable method for 'as.phylo' applied to an object of class "c('Node', 'R6')"
    Calls: as.phylo
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 502-504 (data.tree.Rmd)
    Error: processing vignette ‘data.tree.Rmd’ failed with diagnostics:
    no applicable method for ‘as.igraph’ applied to an object of class "c('Node', 'R6')"
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.7.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshotf8e743deb17f.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshotf8e743deb17f.png': No such file or directory
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.7.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshot560a170983d3.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshot560a170983d3.png': No such file or directory
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64