CRAN Package Check Results for Package data.tree

Last updated on 2018-05-27 07:50:42 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.5 6.95 93.81 100.76 ERROR
r-devel-linux-x86_64-debian-gcc 0.7.5 5.34 72.36 77.70 ERROR
r-devel-linux-x86_64-fedora-clang 0.7.5 130.16 OK
r-devel-linux-x86_64-fedora-gcc 0.7.5 125.63 OK
r-devel-windows-ix86+x86_64 0.7.5 16.00 131.00 147.00 OK
r-patched-linux-x86_64 0.7.5 6.56 84.57 91.13 ERROR
r-patched-solaris-x86 0.7.5 171.40 WARN
r-release-linux-x86_64 0.7.5 6.70 83.06 89.76 ERROR
r-release-windows-ix86+x86_64 0.7.5 19.00 171.00 190.00 OK
r-release-osx-x86_64 0.7.5 WARN
r-oldrel-windows-ix86+x86_64 0.7.5 17.00 129.00 146.00 OK
r-oldrel-osx-x86_64 0.7.5 WARN

Check Details

Version: 0.7.5
Check: examples
Result: ERROR
    Running examples in ‘data.tree-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: GetPhyloNr
    > ### Title: Determine the number a 'Node' has after conversion to a phylo
    > ### object
    > ### Aliases: GetPhyloNr
    >
    > ### ** Examples
    >
    > library(ape)
    > library(data.tree)
    > data(acme)
    > ap <- as.phylo(acme)
    Error in UseMethod("as.phylo") :
     no applicable method for 'as.phylo' applied to an object of class "c('Node', 'R6')"
    Calls: as.phylo
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 502-504 (data.tree.Rmd)
    Error: processing vignette ‘data.tree.Rmd’ failed with diagnostics:
    no applicable method for ‘as.igraph’ applied to an object of class "c('Node', 'R6')"
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.7.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshot59596837133b.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshot59596837133b.png': No such file or directory
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.7.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshot7855792c4f41.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshot7855792c4f41.png': No such file or directory
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64