CRAN Package Check Results for Package ddpcr

Last updated on 2018-05-20 20:47:43 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.8 5.40 108.63 114.03 OK
r-devel-linux-x86_64-debian-gcc 1.8 4.03 67.24 71.27 ERROR
r-devel-linux-x86_64-fedora-clang 1.8 135.12 OK
r-devel-linux-x86_64-fedora-gcc 1.8 131.50 OK
r-devel-windows-ix86+x86_64 1.8 10.00 109.00 119.00 OK
r-patched-linux-x86_64 1.8 4.90 104.49 109.39 OK
r-patched-solaris-x86 1.8 186.90 NOTE
r-release-linux-x86_64 1.8 4.63 102.86 107.49 OK
r-release-windows-ix86+x86_64 1.8 11.00 118.00 129.00 OK
r-release-osx-x86_64 1.8 OK
r-oldrel-windows-ix86+x86_64 1.8 9.00 130.00 139.00 OK
r-oldrel-osx-x86_64 1.8 OK

Check Details

Version: 1.8
Check: tests
Result: ERROR
     Running ‘testthat.R’ [9s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(ddpcr)
    
     Attaching package: 'ddpcr'
    
     The following object is masked from 'package:stats':
    
     step
    
     >
     > test_check("ddpcr")
     ── 1. Error: reset works (@test-plate.R#14) ───────────────────────────────────
     Column `4` cannot have NA as name
     1: plate %>% reset(keep_type = TRUE) at testthat/test-plate.R:14
     2: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
     3: eval(quote(`_fseq`(`_lhs`)), env, env)
     4: eval(quote(`_fseq`(`_lhs`)), env, env)
     5: `_fseq`(`_lhs`)
     6: freduce(value, `_function_list`)
     7: withVisible(function_list[[k]](value))
     8: function_list[[k]](value)
     9: reset(., keep_type = TRUE)
     10: init_plate(plate)
     ...
     14: eval(quote(`_fseq`(`_lhs`)), env, env)
     15: `_fseq`(`_lhs`)
     16: freduce(value, `_function_list`)
     17: function_list[[i]](value)
     18: init_data(.)
     19: dplyr::select_(new_plate_data, "well", x_var, y_var)
     20: select_.data.frame(new_plate_data, "well", x_var, y_var)
     21: select(.data, !!!dots)
     22: select.data.frame(.data, !!!dots)
     23: select_impl(.data, vars)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 267 SKIPPED: 0 FAILED: 1
     1. Error: reset works (@test-plate.R#14)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Reading data files into plate... DONE (0 seconds)
    Initializing plate of type `custom_thresholds`... DONE (0 seconds)
    Identifying outlier droplets... DONE (0 seconds)
    Classifying droplets... DONE (0 seconds)
    Analysis complete
    Reading data files into plate... DONE (0 seconds)
    Initializing plate of type `fam_positive_pnpp`... DONE (0 seconds)
    Identifying failed wells... DONE (0 seconds)
    Identifying outlier droplets... DONE (0 seconds)
    Identifying empty droplets... DONE (0 seconds)
    Classifying droplets... DONE (0 seconds)
    Reclassifying droplets... skipped (not enough wells with significant mutant clusters)
    Analysis complete
    Initializing plate of type `custom_thresholds`... Quitting from lines 348-357 (overview.Rmd)
    Error: processing vignette ‘overview.Rmd’ failed with diagnostics:
    Column `4` cannot have NA as name
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.8
Check: installed package size
Result: NOTE
     installed size is 5.7Mb
     sub-directories of 1Mb or more:
     sample_data 3.6Mb
Flavor: r-patched-solaris-x86