CRAN Package Check Results for Package deisotoper

Last updated on 2018-02-25 20:46:39 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.3 1.77 41.37 43.14 OK
r-devel-linux-x86_64-debian-gcc 0.0.3 1.64 32.67 34.31 OK
r-devel-linux-x86_64-fedora-clang 0.0.3 53.51 OK
r-devel-linux-x86_64-fedora-gcc 0.0.3 51.25 OK
r-devel-windows-ix86+x86_64 0.0.3 5.00 82.00 87.00 OK
r-patched-linux-x86_64 0.0.3 1.69 43.79 45.48 OK
r-release-linux-x86_64 0.0.3 2.17 43.87 46.04 OK
r-release-windows-ix86+x86_64 0.0.3 4.00 79.00 83.00 OK
r-release-osx-x86_64 0.0.3 OK
r-oldrel-windows-ix86+x86_64 0.0.3 4.00 58.00 62.00 OK
r-oldrel-osx-x86_64 0.0.3 ERROR

Check Details

Version: 0.0.3
Check: examples
Result: ERROR
    Running examples in ‘deisotoper-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: deisotope
    > ### Title: Deisotope a Mass Spectrum
    > ### Aliases: deisotope
    >
    > ### ** Examples
    >
    >
    > x <- list(mZ = c(1, 2, 2.5, 3), intensity = rep(1, 4), pepmass=600, charge=2)
    >
    > xd <- deisotope(dtoper <- deisotoper(), x)
    Error in .jnew("ch.fgcz.proteomics.r.FeaturesBasedDeisotoping") :
     java.lang.NoSuchMethodError: java.util.List.stream()Ljava/util/stream/Stream;
    Calls: deisotope ... .jcall -> inherits -> deisotoper -> .jnew -> .External
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.0.3
Check: tests
Result: ERROR
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     9: value[[3L]](cond)
     10: isTRUE(e$handled)
     11: e$handled
     12: `$.Throwable`(e, handled)
     13: ._jobjRef_dollar(x[["jobj"]], name)
     14: stop(sprintf("no field, method or inner class called '%s' ", name))
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 106 SKIPPED: 0 FAILED: 1
     1. Error: (unknown) (@test-deisotoper.R#5)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.0.3
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘deisotoper.Rnw’
     ...
    + 4), pepmass = 600, charge = 2)
    
    > x1 <- list(mZ = c(1.01, 2, 2.5, 3), intensity = rep(1,
    + 4), pepmass = 600, charge = 2)
    
    > dtoper <- deisotoper()
    
     When sourcing 'deisotoper.R':
    Error: java.lang.NoSuchMethodError: java.util.List.stream()Ljava/util/stream/Stream;
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.0.3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: rJava
    
    Error: processing vignette 'deisotoper.Rnw' failed with diagnostics:
     chunk 9
    Error in .jnew("ch.fgcz.proteomics.r.FeaturesBasedDeisotoping") :
     java.lang.NoSuchMethodError: java.util.List.stream()Ljava/util/stream/Stream;
    Execution halted
Flavor: r-oldrel-osx-x86_64