CRAN Package Check Results for Package dodgr

Last updated on 2018-10-16 11:48:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.3 67.38 139.89 207.27 WARN
r-devel-linux-x86_64-debian-gcc 0.0.3 60.04 111.67 171.71 WARN
r-devel-linux-x86_64-fedora-clang 0.0.3 291.85 WARN
r-devel-linux-x86_64-fedora-gcc 0.0.3 136.42 WARN
r-devel-windows-ix86+x86_64 0.0.3 210.00 230.00 440.00 WARN
r-patched-linux-x86_64 0.0.3 76.40 158.89 235.29 OK
r-patched-solaris-x86 0.0.3 294.20 OK
r-release-linux-x86_64 0.0.3 68.29 162.20 230.49 OK
r-release-windows-ix86+x86_64 0.0.3 192.00 294.00 486.00 NOTE
r-release-osx-x86_64 0.0.3 WARN
r-oldrel-windows-ix86+x86_64 0.0.3 190.00 268.00 458.00 NOTE
r-oldrel-osx-x86_64 0.0.3 WARN

Check Details

Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading dodgr
    Re-compiling dodgr
    '/home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/R' --no-site-file \
     --no-environ --no-save --no-restore --quiet CMD INSTALL \
     '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dodgr.Rcheck/vign_test/dodgr' \
     --library='/tmp/Rtmp5k6Jkg/devtools_install_64be2be0afd0' --no-R \
     --no-data --no-help --no-demo --no-inst --no-docs --no-exec \
     --no-multiarch --no-test-load --preclean
    
    * installing *source* package ‘dodgr’ ...
    files ‘R/RcppExports.R’, ‘src/RcppExports.cpp’ have the wrong MD5 checksums
    ** libs
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c dgraph.cpp -o dgraph.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c dijkstra.cpp -o dijkstra.o
    clang-7 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c dodgr_init.c -o dodgr_init.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c graph-contract.cpp -o graph-contract.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c graph-sample.cpp -o graph-sample.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c graph.cpp -o graph.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c run_sp.cpp -o run_sp.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c sf-as-network.cpp -o sf-as-network.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c heaps/bheap.cpp -o heaps/bheap.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c heaps/fheap.cpp -o heaps/fheap.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c heaps/heap23.cpp -o heaps/heap23.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c heaps/radixheap.cpp -o heaps/radixheap.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c heaps/triheap.cpp -o heaps/triheap.o
    clang++-7 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I. -I"/tmp/Rtmpkh9Us7/RLIBS_56097dd91941/Rcpp/include" -I/usr/local/include -fpic -g -O3 -Wall -pedantic -mtune=native -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
    clang++-7 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o dodgr.so RcppExports.o dgraph.o dijkstra.o dodgr_init.o graph-contract.o graph-sample.o graph.o run_sp.o sf-as-network.o heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/radixheap.o heaps/triheap.o heaps/triheap_ext.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    installing to /tmp/Rtmp5k6Jkg/devtools_install_64be2be0afd0/dodgr/libs
    * DONE (dodgr)
    Quitting from lines 18-19 (benchmark.Rmd)
    Error: processing vignette ‘benchmark.Rmd’ failed with diagnostics:
    object ‘nativeRoutines’ not found
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading dodgr
    Re-compiling dodgr
    '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R' --no-site-file \
     --no-environ --no-save --no-restore --quiet CMD INSTALL \
     '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dodgr.Rcheck/vign_test/dodgr' \
     --library='/home/hornik/tmp/scratch/RtmpOzSsBx/devtools_install_64b22982e4d1' \
     --no-R --no-data --no-help --no-demo --no-inst --no-docs --no-exec \
     --no-multiarch --no-test-load --preclean
    
    * installing *source* package ‘dodgr’ ...
    files ‘R/RcppExports.R’, ‘src/RcppExports.cpp’ have the wrong MD5 checksums
    ** libs
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c dgraph.cpp -o dgraph.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c dijkstra.cpp -o dijkstra.o
    gcc-8 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c dodgr_init.c -o dodgr_init.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c graph-contract.cpp -o graph-contract.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c graph-sample.cpp -o graph-sample.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c graph.cpp -o graph.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c run_sp.cpp -o run_sp.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c sf-as-network.cpp -o sf-as-network.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/bheap.cpp -o heaps/bheap.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/fheap.cpp -o heaps/fheap.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/heap23.cpp -o heaps/heap23.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/radixheap.cpp -o heaps/radixheap.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/triheap.cpp -o heaps/triheap.o
    g++-8 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I. -I"/home/hornik/tmp/scratch/RtmpwpfUwv/RLIBS_39ff4d8ef8db/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
    g++-8 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o dodgr.so RcppExports.o dgraph.o dijkstra.o dodgr_init.o graph-contract.o graph-sample.o graph.o run_sp.o sf-as-network.o heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/radixheap.o heaps/triheap.o heaps/triheap_ext.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dodgr.Rcheck/vign_test/dodgr/src'
    installing to /home/hornik/tmp/scratch/RtmpOzSsBx/devtools_install_64b22982e4d1/dodgr/libs
    * DONE (dodgr)
    Quitting from lines 18-19 (benchmark.Rmd)
    Error: processing vignette ‘benchmark.Rmd’ failed with diagnostics:
    object ‘nativeRoutines’ not found
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.0.3
Check: installed package size
Result: NOTE
     installed size is 9.6Mb
     sub-directories of 1Mb or more:
     doc 3.4Mb
     libs 6.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading dodgr
    Re-compiling dodgr
    '/data/gannet/ripley/R/R-clang/bin/R' --no-site-file --no-environ \
     --no-save --no-restore --quiet CMD INSTALL \
     '/data/gannet/ripley/R/packages/tests-clang/dodgr.Rcheck/vign_test/dodgr' \
     --library='/tmp/Rtmp2K2JPz/devtools_install_5f4f67b73dd0' --no-R \
     --no-data --no-help --no-demo --no-inst --no-docs --no-exec \
     --no-multiarch --no-test-load --preclean
    
    * installing *source* package ‘dodgr’ ...
    files ‘R/RcppExports.R’, ‘src/RcppExports.cpp’ have the wrong MD5 checksums
    ** libs
    make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/dodgr.Rcheck/vign_test/dodgr/src'
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c RcppExports.cpp -o RcppExports.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c dgraph.cpp -o dgraph.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c dijkstra.cpp -o dijkstra.o
    clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -c dodgr_init.c -o dodgr_init.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c graph-contract.cpp -o graph-contract.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c graph-sample.cpp -o graph-sample.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c graph.cpp -o graph.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c run_sp.cpp -o run_sp.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c sf-as-network.cpp -o sf-as-network.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c heaps/bheap.cpp -o heaps/bheap.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c heaps/fheap.cpp -o heaps/fheap.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c heaps/heap23.cpp -o heaps/heap23.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c heaps/radixheap.cpp -o heaps/radixheap.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c heaps/triheap.cpp -o heaps/triheap.o
    clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I"/tmp/RtmprQnNav/RLIBS_3fbd389c5c3e/Rcpp/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
    clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o dodgr.so RcppExports.o dgraph.o dijkstra.o dodgr_init.o graph-contract.o graph-sample.o graph.o run_sp.o sf-as-network.o heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/radixheap.o heaps/triheap.o heaps/triheap_ext.o
    make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/dodgr.Rcheck/vign_test/dodgr/src'
    installing to /tmp/Rtmp2K2JPz/devtools_install_5f4f67b73dd0/dodgr/libs
    * DONE (dodgr)
    Quitting from lines 18-19 (benchmark.Rmd)
    Error: processing vignette 'benchmark.Rmd' failed with diagnostics:
    object 'nativeRoutines' not found
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading dodgr
    Re-compiling dodgr
    '/data/gannet/ripley/R/R-devel/bin/R' --no-site-file --no-environ \
     --no-save --no-restore --quiet CMD INSTALL \
     '/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck/vign_test/dodgr' \
     --library='/tmp/RtmplhKUaV/devtools_install_ff34edbd2d5' --no-R \
     --no-data --no-help --no-demo --no-inst --no-docs --no-exec \
     --no-multiarch --no-test-load --preclean
    
    * installing *source* package ‘dodgr’ ...
    files ‘R/RcppExports.R’, ‘src/RcppExports.cpp’ have the wrong MD5 checksums
    ** libs
    make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck/vign_test/dodgr/src'
    make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck/vign_test/dodgr/src'
    make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck/vign_test/dodgr/src'
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c dgraph.cpp -o dgraph.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c dijkstra.cpp -o dijkstra.o
    gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c dodgr_init.c -o dodgr_init.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c graph-contract.cpp -o graph-contract.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c graph-sample.cpp -o graph-sample.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c graph.cpp -o graph.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c run_sp.cpp -o run_sp.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c sf-as-network.cpp -o sf-as-network.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/bheap.cpp -o heaps/bheap.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/fheap.cpp -o heaps/fheap.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/heap23.cpp -o heaps/heap23.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/radixheap.cpp -o heaps/radixheap.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/triheap.cpp -o heaps/triheap.o
    g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I"/tmp/Rtmp1luf19/RLIBS_a736b11357e/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
    g++ -std=gnu++11 -shared -L/usr/local/lib64 -o dodgr.so RcppExports.o dgraph.o dijkstra.o dodgr_init.o graph-contract.o graph-sample.o graph.o run_sp.o sf-as-network.o heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/radixheap.o heaps/triheap.o heaps/triheap_ext.o
    make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck/vign_test/dodgr/src'
    make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck/vign_test/dodgr/src'
    make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck/vign_test/dodgr/src'
    installing to /tmp/RtmplhKUaV/devtools_install_ff34edbd2d5/dodgr/libs
    * DONE (dodgr)
    Quitting from lines 18-19 (benchmark.Rmd)
    Error: processing vignette 'benchmark.Rmd' failed with diagnostics:
    object 'nativeRoutines' not found
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading dodgr
    Re-compiling dodgr
    "D:/RCompile/recent/R/bin/x64/R" --no-site-file --no-environ --no-save \
     --no-restore --quiet CMD INSTALL \
     "d:/RCompile/CRANpkg/local/3.6/dodgr.Rcheck/vign_test/dodgr" \
     --library="D:\temp\RtmpWS6lDK\devtools_install_14c78477719ad" --no-R \
     --no-data --no-help --no-demo --no-inst --no-docs --no-exec \
     --no-multiarch --no-test-load --preclean
    
    * installing *source* package 'dodgr' ...
    files 'R/RcppExports.R', 'src/RcppExports.cpp' have the wrong MD5 checksums
    ** libs
    make[1]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/dodgr.Rcheck/vign_test/dodgr/src'
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c dgraph.cpp -o dgraph.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c dijkstra.cpp -o dijkstra.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/gcc -m64 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -std=gnu99 -mtune=core2 -c dodgr_init.c -o dodgr_init.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c graph-contract.cpp -o graph-contract.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c graph-sample.cpp -o graph-sample.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c graph.cpp -o graph.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c run_sp.cpp -o run_sp.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c sf-as-network.cpp -o sf-as-network.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c heaps/bheap.cpp -o heaps/bheap.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c heaps/fheap.cpp -o heaps/fheap.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c heaps/heap23.cpp -o heaps/heap23.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c heaps/radixheap.cpp -o heaps/radixheap.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c heaps/triheap.cpp -o heaps/triheap.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I"D:/temp/RtmpOaJFKe/RLIBS_2f63c6d287f0c/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o dodgr.dll tmp.def RcppExports.o dgraph.o dijkstra.o dodgr_init.o graph-contract.o graph-sample.o graph.o run_sp.o sf-as-network.o heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/radixheap.o heaps/triheap.o heaps/triheap_ext.o -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R/bin/x64 -lR
    make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/dodgr.Rcheck/vign_test/dodgr/src'
    make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/dodgr.Rcheck/vign_test/dodgr/src'
    installing to D:/temp/RtmpWS6lDK/devtools_install_14c78477719ad/dodgr/libs/x64
    * DONE (dodgr)
    In R CMD INSTALL
    Quitting from lines 18-19 (benchmark.Rmd)
    Error: processing vignette 'benchmark.Rmd' failed with diagnostics:
    object 'nativeRoutines' not found
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading dodgr
    Quitting from lines 117-144 (benchmark.Rmd)
    Error: processing vignette 'benchmark.Rmd' failed with diagnostics:
    polygon edge not found
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64