CRAN Package Check Results for Package dynamichazard

Last updated on 2021-09-27 21:49:04 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.0 681.48 224.36 905.84 ERROR
r-devel-linux-x86_64-debian-gcc 1.0.0 451.52 167.64 619.16 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.0 1301.10 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0.0 1125.95 ERROR
r-devel-windows-x86_64 1.0.0 569.00 238.00 807.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.0.0 ERROR
r-patched-linux-x86_64 1.0.0 536.97 221.85 758.82 OK
r-patched-solaris-x86 1.0.0 882.60 NOTE
r-release-linux-x86_64 1.0.0 542.38 222.65 765.03 OK
r-release-macos-arm64 1.0.0 NOTE
r-release-macos-x86_64 1.0.0 NOTE
r-release-windows-ix86+x86_64 1.0.0 1478.00 350.00 1828.00 NOTE
r-oldrel-macos-x86_64 1.0.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0.0 1083.00 314.00 1397.00 NOTE

Check Details

Version: 1.0.0
Check: tests
Result: ERROR
     Running 'testthat.R' [53s/65s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # Had the same issue as in this thread: https://github.com/hadley/testthat/issues/86
     > # or maybe https://github.com/r-lib/devtools/issues/1526
     > Sys.unsetenv("R_TESTS")
     >
     > options(deparse.max.lines = 5, testthat.summary.max_reports = 1000L)
     > testthat::test_check("dynamichazard", reporter = "summary")
     Loading required package: dynamichazard
     Loading required package: survival
     Tracing function "expect_known_value" in package "testthat"
     Tracing function "expect_known_output" in package "testthat"
     Loading required package: DBI
     GMA:
     Running tests for GMA: ..................
     LAPACK_BLAS:
     Testing LAPACK wrapper functions: ..............................................
     PF:
     Running test_PF: ........................................................................................................................................................................................................SS...SSSSSSSS..S..SS..SSSSSSSSSSSS
     SMA:
     Testing SMA: ................S..............
     UKF:
     Testing UKF: .........................
     bigglm_wrapper:
     Testing bigglm_wrapper: ......SS
     boot_est:
     Testing boot: ...S..................................................................................................................................................................................................................................................................................................................................................................................................................
     cloglog:
     testing cloglog link function: ....S
     cpp_sample_funcs:
     Testing cpp sampling functions: S..S.............................................................S....
     cpp_utils:
     Running test_cpp_utils.R:: .S............
     ddhazard_n_EKF:
     Testing ddhazard w/ generic things and w/ the the EKF: .....................S................
     design_mat_and_risk_obj:
     Testing design_mat_and_risk_obj: ..................................................................................................................................................................................................................................................................................................................................................1...............................................2......................................................
     fixed_effects_in_E_step:
     Testing fixed_effects_in_E_step: .........
     fixed_effects_in_M_step:
     Testing test_fixed_effects_in_M_step: ..........S..
     get_start_values:
     Testing 'get_start_values': ....................
     hatvalues:
     Running tests for hatvalues: ....
     help_page_examples:
     Testing examples in man files: .......S.S....SSSS........S
     loglike:
     Testing loglike: ........................
     options:
     Testing options: .
     parallelglm:
     Testing parallelglm vs. glm: ................................................S
     plot:
     Testing plot functions: ......................................
     predict:
     Testing predict: ...............................................................................SS
     print:
     Testing print function: ...SS.....
     residuals:
     Testing residuals functions: ..................................................................................................................................................................................................SS
     shiny_app:
     Testing shiny app: ..
     static_glm:
     Testing static_glm: .............................
     summary:
     Testing summary function: .................
     test_utils:
     Testing test_utils: ............S......................................
     weights:
     Testing weights in fit: ................
    
     == Skipped =====================================================================
     1. PF_smooth gives same results (test_PF.R:71:3) - Reason: On CRAN
    
     2. Import and export PF cloud from Rcpp gives the same (test_PF.R:251:3) - Reason: On CRAN
    
     3. PF_EM gives previous results on head neck data set (test_PF.R:344:3) - Reason: On CRAN
    
     4. PF_EM gives previous results on head neck data set with fixed effects and the logit model (test_PF.R:411:3) - Reason: On CRAN
    
     5. compute_PF_summary_stats gives previous results (test_PF.R:436:3) - Reason: On CRAN
    
     6. 'get_cloud_means' and 'get_cloud_quantiles' gives previous results (test_PF.R:510:3) - Reason: On CRAN
    
     7. 'get_ancestors' yields the correct result (test_PF.R:560:3) - Reason: On CRAN
    
     8. <U+00B4>est_params_dens<U+00B4> gives the same as a R version (test_PF.R:582:3) - Reason: On CRAN
    
     9. fixed effect estimation gives the same as an R implementation (test_PF.R:630:3) - Reason: On CRAN
    
     10. A few iterations with `type = "VAR"' yields the same as before (test_PF.R:711:3) - Reason: On CRAN
    
     11. PF_EM gives the same with restricted and unrestricted model when we estimate all the parameters (test_PF.R:783:3) - Reason: On CRAN
    
     12. Using `n_smooth_final` works as expected and yields previous results (test_PF.R:896:3) - Reason: On CRAN
    
     13. sampling with a t-distribution gives previous results (test_PF.R:964:3) - Reason: On CRAN
    
     14. 'PF_forward_filter' gives the same as 'PF_EM' when it should (test_PF.R:1002:3) - Reason: On CRAN
    
     15. 'state_fw' gives correct results (test_PF.R:1131:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     16. 'state_bw' gives correct results (test_PF.R:1167:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     17. 'artificial_prior' gives correct results (test_PF.R:1202:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     18. 'observational_cdist' gives correct results (test_PF.R:1236:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     19. combining forward and backwards works (test_PF.R:1281:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     20. combining prior and backwards works (test_PF.R:1328:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     21. mode approximations give expected result (test_PF.R:1366:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     22. 'PF_get_score_n_hess' gives the same as an R implementation (test_PF.R:1486:3) - Reason: On CRAN
    
     23. warns with randow walk model when covariates are in both fixed and random (test_PF.R:1624:3) - Reason: On CRAN
    
     24. works when there are time periods outside where we have data and with a single fixed and random effect (test_PF.R:1645:3) - Reason: On CRAN
    
     25. 'fix_seed = FALSE' yields different results at each call (test_PF.R:1670:3) - Reason: On CRAN
    
     26. Chaning the learning changes the result for the posterior approx method (test_SMA.R:120:3) - Reason: On CRAN
    
     27. bigglm and my c++ version yields similar results with offsets (test_bigglm_wrapper.R:298:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     28. bigglm and my c++ version yields similar with weights (test_bigglm_wrapper.R:328:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     29. boot yields previously computed values with pbc (test_boot_est.R:19:3) - Reason: On CRAN
    
     30. cloglog function gives previous result with simulated data using PF_EM and PF_forward_filter (test_cloglog.R:56:3) - Reason: On CRAN
    
     31. sample_indices give the same as R with same seed (test_cpp_sample_funcs.R:4:3) - Reason: On CRAN
    
     32. mvrnorm gives expected sample mean and variance (test_cpp_sample_funcs.R:51:3) - Reason: On CRAN
    
     33. 'mvtrnorm' yields close to uniform sample (test_cpp_sample_funcs.R:112:3) - Reason: On CRAN
    
     34. trunc_lp_in_exponential_dist does not truncate when not needed (test_cpp_utils.R:12:3) - Reason: On CRAN
    
     35. Different non-integer time_scales gives the same result with ddhazard (test_ddhazard_n_EKF.R:165:3) - Reason: On CRAN
    
     36. posterior_approx gives previous found values with fixed effects in M-step (test_fixed_effects_in_M_step.R:187:3) - Reason: On CRAN
    
     37. residuals.ddhazard help page examples gives the same results (test_help_page_examples.R:43:3) - Reason: On CRAN
    
     38. ddhazard_boot help page examples gives the same results (test_help_page_examples.R:67:3) - Reason: On CRAN
    
     39. PF_EM help page example runs and gives previous computed results (test_help_page_examples.R:129:3) - Reason: On CRAN
    
     40. Second example on PF help page gives the same result (test_help_page_examples.R:171:3) - Reason: On CRAN
    
     41. example in 'PF_EM' with gives previous results w/ a few iterations (test_help_page_examples.R:227:3) - Reason: On CRAN
    
     42. `PF_forward_filter` the results stated in the comments and does not alter the .Random.seed as stated on the help page (test_help_page_examples.R:358:3) - Reason: On CRAN
    
     43. 'PF_get_score_n_hess' gives previous results (test_help_page_examples.R:516:3) - Reason: On CRAN
    
     44. glm and parallelglm gives the same (test_parallelglm.R:80:3) - Reason: On CRAN
    
     45. Terms from predict with exponential outcome are correct (test_predict.R:413:3) - Reason: On CRAN
    
     46. Different non-integer time_scales gives the same result with predict results (test_predict.R:474:3) - Reason: On CRAN
    
     47. print.ddhazard_boot gives the expected output (test_print.R:39:3) - Reason: On CRAN
    
     48. Print function for PF objects gives previous results (test_print.R:89:3) - Reason: On CRAN
    
     49. Gets previous results with Rossi (test_residuals.R:209:3) - Reason: On CRAN
    
     50. Get prevoius residuals with whas500 (test_residuals.R:236:3) - Reason: On CRAN
    
     51. Testing util functions to sim series for tests (test_test_utils.R:28:3) - Reason: On CRAN
    
     == Failed ======================================================================
     -- 1. Error (test_design_mat_and_risk_obj.R:583:3): Permutating gives the data f
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:583:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     -- 2. Error (test_design_mat_and_risk_obj.R:644:3): Ordering gives the data fram
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:644:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     == DONE ========================================================================
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [36s/59s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # Had the same issue as in this thread: https://github.com/hadley/testthat/issues/86
     > # or maybe https://github.com/r-lib/devtools/issues/1526
     > Sys.unsetenv("R_TESTS")
     >
     > options(deparse.max.lines = 5, testthat.summary.max_reports = 1000L)
     > testthat::test_check("dynamichazard", reporter = "summary")
     Loading required package: dynamichazard
     Loading required package: survival
     Tracing function "expect_known_value" in package "testthat"
     Tracing function "expect_known_output" in package "testthat"
     Loading required package: DBI
     GMA:
     Running tests for GMA: ..................
     LAPACK_BLAS:
     Testing LAPACK wrapper functions: ..............................................
     PF:
     Running test_PF: ........................................................................................................................................................................................................SS...SSSSSSSS..S..SS..SSSSSSSSSSSS
     SMA:
     Testing SMA: ................S..............
     UKF:
     Testing UKF: .........................
     bigglm_wrapper:
     Testing bigglm_wrapper: ......SS
     boot_est:
     Testing boot: ...S..................................................................................................................................................................................................................................................................................................................................................................................................................
     cloglog:
     testing cloglog link function: ....S
     cpp_sample_funcs:
     Testing cpp sampling functions: S..S.............................................................S....
     cpp_utils:
     Running test_cpp_utils.R:: .S............
     ddhazard_n_EKF:
     Testing ddhazard w/ generic things and w/ the the EKF: .....................S................
     design_mat_and_risk_obj:
     Testing design_mat_and_risk_obj: ..................................................................................................................................................................................................................................................................................................................................................1...............................................2......................................................
     fixed_effects_in_E_step:
     Testing fixed_effects_in_E_step: .........
     fixed_effects_in_M_step:
     Testing test_fixed_effects_in_M_step: ..........S..
     get_start_values:
     Testing 'get_start_values': ....................
     hatvalues:
     Running tests for hatvalues: ....
     help_page_examples:
     Testing examples in man files: .......S.S....SSSS........S
     loglike:
     Testing loglike: ........................
     options:
     Testing options: .
     parallelglm:
     Testing parallelglm vs. glm: ................................................S
     plot:
     Testing plot functions: ......................................
     predict:
     Testing predict: ...............................................................................SS
     print:
     Testing print function: ...SS.....
     residuals:
     Testing residuals functions: ..................................................................................................................................................................................................SS
     shiny_app:
     Testing shiny app: ..
     static_glm:
     Testing static_glm: .............................
     summary:
     Testing summary function: .................
     test_utils:
     Testing test_utils: ............S......................................
     weights:
     Testing weights in fit: ................
    
     ══ Skipped ═════════════════════════════════════════════════════════════════════
     1. PF_smooth gives same results (test_PF.R:71:3) - Reason: On CRAN
    
     2. Import and export PF cloud from Rcpp gives the same (test_PF.R:251:3) - Reason: On CRAN
    
     3. PF_EM gives previous results on head neck data set (test_PF.R:344:3) - Reason: On CRAN
    
     4. PF_EM gives previous results on head neck data set with fixed effects and the logit model (test_PF.R:411:3) - Reason: On CRAN
    
     5. compute_PF_summary_stats gives previous results (test_PF.R:436:3) - Reason: On CRAN
    
     6. 'get_cloud_means' and 'get_cloud_quantiles' gives previous results (test_PF.R:510:3) - Reason: On CRAN
    
     7. 'get_ancestors' yields the correct result (test_PF.R:560:3) - Reason: On CRAN
    
     8. ´est_params_dens´ gives the same as a R version (test_PF.R:582:3) - Reason: On CRAN
    
     9. fixed effect estimation gives the same as an R implementation (test_PF.R:630:3) - Reason: On CRAN
    
     10. A few iterations with `type = "VAR"' yields the same as before (test_PF.R:711:3) - Reason: On CRAN
    
     11. PF_EM gives the same with restricted and unrestricted model when we estimate all the parameters (test_PF.R:783:3) - Reason: On CRAN
    
     12. Using `n_smooth_final` works as expected and yields previous results (test_PF.R:896:3) - Reason: On CRAN
    
     13. sampling with a t-distribution gives previous results (test_PF.R:964:3) - Reason: On CRAN
    
     14. 'PF_forward_filter' gives the same as 'PF_EM' when it should (test_PF.R:1002:3) - Reason: On CRAN
    
     15. 'state_fw' gives correct results (test_PF.R:1131:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     16. 'state_bw' gives correct results (test_PF.R:1167:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     17. 'artificial_prior' gives correct results (test_PF.R:1202:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     18. 'observational_cdist' gives correct results (test_PF.R:1236:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     19. combining forward and backwards works (test_PF.R:1281:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     20. combining prior and backwards works (test_PF.R:1328:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     21. mode approximations give expected result (test_PF.R:1366:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     22. 'PF_get_score_n_hess' gives the same as an R implementation (test_PF.R:1486:3) - Reason: On CRAN
    
     23. warns with randow walk model when covariates are in both fixed and random (test_PF.R:1624:3) - Reason: On CRAN
    
     24. works when there are time periods outside where we have data and with a single fixed and random effect (test_PF.R:1645:3) - Reason: On CRAN
    
     25. 'fix_seed = FALSE' yields different results at each call (test_PF.R:1670:3) - Reason: On CRAN
    
     26. Chaning the learning changes the result for the posterior approx method (test_SMA.R:120:3) - Reason: On CRAN
    
     27. bigglm and my c++ version yields similar results with offsets (test_bigglm_wrapper.R:298:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     28. bigglm and my c++ version yields similar with weights (test_bigglm_wrapper.R:328:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     29. boot yields previously computed values with pbc (test_boot_est.R:19:3) - Reason: On CRAN
    
     30. cloglog function gives previous result with simulated data using PF_EM and PF_forward_filter (test_cloglog.R:56:3) - Reason: On CRAN
    
     31. sample_indices give the same as R with same seed (test_cpp_sample_funcs.R:4:3) - Reason: On CRAN
    
     32. mvrnorm gives expected sample mean and variance (test_cpp_sample_funcs.R:51:3) - Reason: On CRAN
    
     33. 'mvtrnorm' yields close to uniform sample (test_cpp_sample_funcs.R:112:3) - Reason: On CRAN
    
     34. trunc_lp_in_exponential_dist does not truncate when not needed (test_cpp_utils.R:12:3) - Reason: On CRAN
    
     35. Different non-integer time_scales gives the same result with ddhazard (test_ddhazard_n_EKF.R:165:3) - Reason: On CRAN
    
     36. posterior_approx gives previous found values with fixed effects in M-step (test_fixed_effects_in_M_step.R:187:3) - Reason: On CRAN
    
     37. residuals.ddhazard help page examples gives the same results (test_help_page_examples.R:43:3) - Reason: On CRAN
    
     38. ddhazard_boot help page examples gives the same results (test_help_page_examples.R:67:3) - Reason: On CRAN
    
     39. PF_EM help page example runs and gives previous computed results (test_help_page_examples.R:129:3) - Reason: On CRAN
    
     40. Second example on PF help page gives the same result (test_help_page_examples.R:171:3) - Reason: On CRAN
    
     41. example in 'PF_EM' with gives previous results w/ a few iterations (test_help_page_examples.R:227:3) - Reason: On CRAN
    
     42. `PF_forward_filter` the results stated in the comments and does not alter the .Random.seed as stated on the help page (test_help_page_examples.R:358:3) - Reason: On CRAN
    
     43. 'PF_get_score_n_hess' gives previous results (test_help_page_examples.R:516:3) - Reason: On CRAN
    
     44. glm and parallelglm gives the same (test_parallelglm.R:80:3) - Reason: On CRAN
    
     45. Terms from predict with exponential outcome are correct (test_predict.R:413:3) - Reason: On CRAN
    
     46. Different non-integer time_scales gives the same result with predict results (test_predict.R:474:3) - Reason: On CRAN
    
     47. print.ddhazard_boot gives the expected output (test_print.R:39:3) - Reason: On CRAN
    
     48. Print function for PF objects gives previous results (test_print.R:89:3) - Reason: On CRAN
    
     49. Gets previous results with Rossi (test_residuals.R:209:3) - Reason: On CRAN
    
     50. Get prevoius residuals with whas500 (test_residuals.R:236:3) - Reason: On CRAN
    
     51. Testing util functions to sim series for tests (test_test_utils.R:28:3) - Reason: On CRAN
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Error (test_design_mat_and_risk_obj.R:583:3): Permutating gives the data f
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:583:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ── 2. Error (test_design_mat_and_risk_obj.R:644:3): Ordering gives the data fram
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:644:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: installed package size
Result: NOTE
     installed size is 30.7Mb
     sub-directories of 1Mb or more:
     data 4.2Mb
     doc 1.7Mb
     libs 24.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [60s/137s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # Had the same issue as in this thread: https://github.com/hadley/testthat/issues/86
     > # or maybe https://github.com/r-lib/devtools/issues/1526
     > Sys.unsetenv("R_TESTS")
     >
     > options(deparse.max.lines = 5, testthat.summary.max_reports = 1000L)
     > testthat::test_check("dynamichazard", reporter = "summary")
     Loading required package: dynamichazard
     Loading required package: survival
     Tracing function "expect_known_value" in package "testthat"
     Tracing function "expect_known_output" in package "testthat"
     Loading required package: DBI
     GMA:
     Running tests for GMA: ..................
     LAPACK_BLAS:
     Testing LAPACK wrapper functions: ..............................................
     PF:
     Running test_PF: ........................................................................................................................................................................................................SS...SSSSSSSS..S..SS..SSSSSSSSSSSS
     SMA:
     Testing SMA: ................S..............
     UKF:
     Testing UKF: .........................
     bigglm_wrapper:
     Testing bigglm_wrapper: ......SS
     boot_est:
     Testing boot: ...S..................................................................................................................................................................................................................................................................................................................................................................................................................
     cloglog:
     testing cloglog link function: ....S
     cpp_sample_funcs:
     Testing cpp sampling functions: S..S.............................................................S....
     cpp_utils:
     Running test_cpp_utils.R:: .S............
     ddhazard_n_EKF:
     Testing ddhazard w/ generic things and w/ the the EKF: .....................S................
     design_mat_and_risk_obj:
     Testing design_mat_and_risk_obj: ..................................................................................................................................................................................................................................................................................................................................................1...............................................2......................................................
     fixed_effects_in_E_step:
     Testing fixed_effects_in_E_step: .........
     fixed_effects_in_M_step:
     Testing test_fixed_effects_in_M_step: ..........S..
     get_start_values:
     Testing 'get_start_values': ....................
     hatvalues:
     Running tests for hatvalues: ....
     help_page_examples:
     Testing examples in man files: .......S.S....SSSS........S
     loglike:
     Testing loglike: ........................
     options:
     Testing options: .
     parallelglm:
     Testing parallelglm vs. glm: ................................................S
     plot:
     Testing plot functions: ......................................
     predict:
     Testing predict: ...............................................................................SS
     print:
     Testing print function: ...SS.....
     residuals:
     Testing residuals functions: ..................................................................................................................................................................................................SS
     shiny_app:
     Testing shiny app: ..
     static_glm:
     Testing static_glm: .............................
     summary:
     Testing summary function: .................
     test_utils:
     Testing test_utils: ............S......................................
     weights:
     Testing weights in fit: ................
    
     ══ Skipped ═════════════════════════════════════════════════════════════════════
     1. PF_smooth gives same results (test_PF.R:71:3) - Reason: On CRAN
    
     2. Import and export PF cloud from Rcpp gives the same (test_PF.R:251:3) - Reason: On CRAN
    
     3. PF_EM gives previous results on head neck data set (test_PF.R:344:3) - Reason: On CRAN
    
     4. PF_EM gives previous results on head neck data set with fixed effects and the logit model (test_PF.R:411:3) - Reason: On CRAN
    
     5. compute_PF_summary_stats gives previous results (test_PF.R:436:3) - Reason: On CRAN
    
     6. 'get_cloud_means' and 'get_cloud_quantiles' gives previous results (test_PF.R:510:3) - Reason: On CRAN
    
     7. 'get_ancestors' yields the correct result (test_PF.R:560:3) - Reason: On CRAN
    
     8. ´est_params_dens´ gives the same as a R version (test_PF.R:582:3) - Reason: On CRAN
    
     9. fixed effect estimation gives the same as an R implementation (test_PF.R:630:3) - Reason: On CRAN
    
     10. A few iterations with `type = "VAR"' yields the same as before (test_PF.R:711:3) - Reason: On CRAN
    
     11. PF_EM gives the same with restricted and unrestricted model when we estimate all the parameters (test_PF.R:783:3) - Reason: On CRAN
    
     12. Using `n_smooth_final` works as expected and yields previous results (test_PF.R:896:3) - Reason: On CRAN
    
     13. sampling with a t-distribution gives previous results (test_PF.R:964:3) - Reason: On CRAN
    
     14. 'PF_forward_filter' gives the same as 'PF_EM' when it should (test_PF.R:1002:3) - Reason: On CRAN
    
     15. 'state_fw' gives correct results (test_PF.R:1131:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     16. 'state_bw' gives correct results (test_PF.R:1167:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     17. 'artificial_prior' gives correct results (test_PF.R:1202:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     18. 'observational_cdist' gives correct results (test_PF.R:1236:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     19. combining forward and backwards works (test_PF.R:1281:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     20. combining prior and backwards works (test_PF.R:1328:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     21. mode approximations give expected result (test_PF.R:1366:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     22. 'PF_get_score_n_hess' gives the same as an R implementation (test_PF.R:1486:3) - Reason: On CRAN
    
     23. warns with randow walk model when covariates are in both fixed and random (test_PF.R:1624:3) - Reason: On CRAN
    
     24. works when there are time periods outside where we have data and with a single fixed and random effect (test_PF.R:1645:3) - Reason: On CRAN
    
     25. 'fix_seed = FALSE' yields different results at each call (test_PF.R:1670:3) - Reason: On CRAN
    
     26. Chaning the learning changes the result for the posterior approx method (test_SMA.R:120:3) - Reason: On CRAN
    
     27. bigglm and my c++ version yields similar results with offsets (test_bigglm_wrapper.R:298:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     28. bigglm and my c++ version yields similar with weights (test_bigglm_wrapper.R:328:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     29. boot yields previously computed values with pbc (test_boot_est.R:19:3) - Reason: On CRAN
    
     30. cloglog function gives previous result with simulated data using PF_EM and PF_forward_filter (test_cloglog.R:56:3) - Reason: On CRAN
    
     31. sample_indices give the same as R with same seed (test_cpp_sample_funcs.R:4:3) - Reason: On CRAN
    
     32. mvrnorm gives expected sample mean and variance (test_cpp_sample_funcs.R:51:3) - Reason: On CRAN
    
     33. 'mvtrnorm' yields close to uniform sample (test_cpp_sample_funcs.R:112:3) - Reason: On CRAN
    
     34. trunc_lp_in_exponential_dist does not truncate when not needed (test_cpp_utils.R:12:3) - Reason: On CRAN
    
     35. Different non-integer time_scales gives the same result with ddhazard (test_ddhazard_n_EKF.R:165:3) - Reason: On CRAN
    
     36. posterior_approx gives previous found values with fixed effects in M-step (test_fixed_effects_in_M_step.R:187:3) - Reason: On CRAN
    
     37. residuals.ddhazard help page examples gives the same results (test_help_page_examples.R:43:3) - Reason: On CRAN
    
     38. ddhazard_boot help page examples gives the same results (test_help_page_examples.R:67:3) - Reason: On CRAN
    
     39. PF_EM help page example runs and gives previous computed results (test_help_page_examples.R:129:3) - Reason: On CRAN
    
     40. Second example on PF help page gives the same result (test_help_page_examples.R:171:3) - Reason: On CRAN
    
     41. example in 'PF_EM' with gives previous results w/ a few iterations (test_help_page_examples.R:227:3) - Reason: On CRAN
    
     42. `PF_forward_filter` the results stated in the comments and does not alter the .Random.seed as stated on the help page (test_help_page_examples.R:358:3) - Reason: On CRAN
    
     43. 'PF_get_score_n_hess' gives previous results (test_help_page_examples.R:516:3) - Reason: On CRAN
    
     44. glm and parallelglm gives the same (test_parallelglm.R:80:3) - Reason: On CRAN
    
     45. Terms from predict with exponential outcome are correct (test_predict.R:413:3) - Reason: On CRAN
    
     46. Different non-integer time_scales gives the same result with predict results (test_predict.R:474:3) - Reason: On CRAN
    
     47. print.ddhazard_boot gives the expected output (test_print.R:39:3) - Reason: On CRAN
    
     48. Print function for PF objects gives previous results (test_print.R:89:3) - Reason: On CRAN
    
     49. Gets previous results with Rossi (test_residuals.R:209:3) - Reason: On CRAN
    
     50. Get prevoius residuals with whas500 (test_residuals.R:236:3) - Reason: On CRAN
    
     51. Testing util functions to sim series for tests (test_test_utils.R:28:3) - Reason: On CRAN
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Error (test_design_mat_and_risk_obj.R:583:3): Permutating gives the data f
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:583:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ── 2. Error (test_design_mat_and_risk_obj.R:644:3): Ordering gives the data fram
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:644:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [59s/84s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # Had the same issue as in this thread: https://github.com/hadley/testthat/issues/86
     > # or maybe https://github.com/r-lib/devtools/issues/1526
     > Sys.unsetenv("R_TESTS")
     >
     > options(deparse.max.lines = 5, testthat.summary.max_reports = 1000L)
     > testthat::test_check("dynamichazard", reporter = "summary")
     Loading required package: dynamichazard
     Loading required package: survival
     Tracing function "expect_known_value" in package "testthat"
     Tracing function "expect_known_output" in package "testthat"
     Loading required package: DBI
     GMA:
     Running tests for GMA: ..................
     LAPACK_BLAS:
     Testing LAPACK wrapper functions: ..............................................
     PF:
     Running test_PF: ........................................................................................................................................................................................................SS...SSSSSSSS..S..SS..SSSSSSSSSSSS
     SMA:
     Testing SMA: ................S..............
     UKF:
     Testing UKF: .........................
     bigglm_wrapper:
     Testing bigglm_wrapper: ......SS
     boot_est:
     Testing boot: ...S..................................................................................................................................................................................................................................................................................................................................................................................................................
     cloglog:
     testing cloglog link function: ....S
     cpp_sample_funcs:
     Testing cpp sampling functions: S..S.............................................................S....
     cpp_utils:
     Running test_cpp_utils.R:: .S............
     ddhazard_n_EKF:
     Testing ddhazard w/ generic things and w/ the the EKF: .....................S................
     design_mat_and_risk_obj:
     Testing design_mat_and_risk_obj: ..................................................................................................................................................................................................................................................................................................................................................1...............................................2......................................................
     fixed_effects_in_E_step:
     Testing fixed_effects_in_E_step: .........
     fixed_effects_in_M_step:
     Testing test_fixed_effects_in_M_step: ..........S..
     get_start_values:
     Testing 'get_start_values': ....................
     hatvalues:
     Running tests for hatvalues: ....
     help_page_examples:
     Testing examples in man files: .......S.S....SSSS........S
     loglike:
     Testing loglike: ........................
     options:
     Testing options: .
     parallelglm:
     Testing parallelglm vs. glm: ................................................S
     plot:
     Testing plot functions: ......................................
     predict:
     Testing predict: ...............................................................................SS
     print:
     Testing print function: ...SS.....
     residuals:
     Testing residuals functions: ..................................................................................................................................................................................................SS
     shiny_app:
     Testing shiny app: ..
     static_glm:
     Testing static_glm: .............................
     summary:
     Testing summary function: .................
     test_utils:
     Testing test_utils: ............S......................................
     weights:
     Testing weights in fit: ................
    
     ══ Skipped ═════════════════════════════════════════════════════════════════════
     1. PF_smooth gives same results (test_PF.R:71:3) - Reason: On CRAN
    
     2. Import and export PF cloud from Rcpp gives the same (test_PF.R:251:3) - Reason: On CRAN
    
     3. PF_EM gives previous results on head neck data set (test_PF.R:344:3) - Reason: On CRAN
    
     4. PF_EM gives previous results on head neck data set with fixed effects and the logit model (test_PF.R:411:3) - Reason: On CRAN
    
     5. compute_PF_summary_stats gives previous results (test_PF.R:436:3) - Reason: On CRAN
    
     6. 'get_cloud_means' and 'get_cloud_quantiles' gives previous results (test_PF.R:510:3) - Reason: On CRAN
    
     7. 'get_ancestors' yields the correct result (test_PF.R:560:3) - Reason: On CRAN
    
     8. ´est_params_dens´ gives the same as a R version (test_PF.R:582:3) - Reason: On CRAN
    
     9. fixed effect estimation gives the same as an R implementation (test_PF.R:630:3) - Reason: On CRAN
    
     10. A few iterations with `type = "VAR"' yields the same as before (test_PF.R:711:3) - Reason: On CRAN
    
     11. PF_EM gives the same with restricted and unrestricted model when we estimate all the parameters (test_PF.R:783:3) - Reason: On CRAN
    
     12. Using `n_smooth_final` works as expected and yields previous results (test_PF.R:896:3) - Reason: On CRAN
    
     13. sampling with a t-distribution gives previous results (test_PF.R:964:3) - Reason: On CRAN
    
     14. 'PF_forward_filter' gives the same as 'PF_EM' when it should (test_PF.R:1002:3) - Reason: On CRAN
    
     15. 'state_fw' gives correct results (test_PF.R:1131:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     16. 'state_bw' gives correct results (test_PF.R:1167:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     17. 'artificial_prior' gives correct results (test_PF.R:1202:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     18. 'observational_cdist' gives correct results (test_PF.R:1236:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     19. combining forward and backwards works (test_PF.R:1281:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     20. combining prior and backwards works (test_PF.R:1328:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     21. mode approximations give expected result (test_PF.R:1366:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     22. 'PF_get_score_n_hess' gives the same as an R implementation (test_PF.R:1486:3) - Reason: On CRAN
    
     23. warns with randow walk model when covariates are in both fixed and random (test_PF.R:1624:3) - Reason: On CRAN
    
     24. works when there are time periods outside where we have data and with a single fixed and random effect (test_PF.R:1645:3) - Reason: On CRAN
    
     25. 'fix_seed = FALSE' yields different results at each call (test_PF.R:1670:3) - Reason: On CRAN
    
     26. Chaning the learning changes the result for the posterior approx method (test_SMA.R:120:3) - Reason: On CRAN
    
     27. bigglm and my c++ version yields similar results with offsets (test_bigglm_wrapper.R:298:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     28. bigglm and my c++ version yields similar with weights (test_bigglm_wrapper.R:328:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     29. boot yields previously computed values with pbc (test_boot_est.R:19:3) - Reason: On CRAN
    
     30. cloglog function gives previous result with simulated data using PF_EM and PF_forward_filter (test_cloglog.R:56:3) - Reason: On CRAN
    
     31. sample_indices give the same as R with same seed (test_cpp_sample_funcs.R:4:3) - Reason: On CRAN
    
     32. mvrnorm gives expected sample mean and variance (test_cpp_sample_funcs.R:51:3) - Reason: On CRAN
    
     33. 'mvtrnorm' yields close to uniform sample (test_cpp_sample_funcs.R:112:3) - Reason: On CRAN
    
     34. trunc_lp_in_exponential_dist does not truncate when not needed (test_cpp_utils.R:12:3) - Reason: On CRAN
    
     35. Different non-integer time_scales gives the same result with ddhazard (test_ddhazard_n_EKF.R:165:3) - Reason: On CRAN
    
     36. posterior_approx gives previous found values with fixed effects in M-step (test_fixed_effects_in_M_step.R:187:3) - Reason: On CRAN
    
     37. residuals.ddhazard help page examples gives the same results (test_help_page_examples.R:43:3) - Reason: On CRAN
    
     38. ddhazard_boot help page examples gives the same results (test_help_page_examples.R:67:3) - Reason: On CRAN
    
     39. PF_EM help page example runs and gives previous computed results (test_help_page_examples.R:129:3) - Reason: On CRAN
    
     40. Second example on PF help page gives the same result (test_help_page_examples.R:171:3) - Reason: On CRAN
    
     41. example in 'PF_EM' with gives previous results w/ a few iterations (test_help_page_examples.R:227:3) - Reason: On CRAN
    
     42. `PF_forward_filter` the results stated in the comments and does not alter the .Random.seed as stated on the help page (test_help_page_examples.R:358:3) - Reason: On CRAN
    
     43. 'PF_get_score_n_hess' gives previous results (test_help_page_examples.R:516:3) - Reason: On CRAN
    
     44. glm and parallelglm gives the same (test_parallelglm.R:80:3) - Reason: On CRAN
    
     45. Terms from predict with exponential outcome are correct (test_predict.R:413:3) - Reason: On CRAN
    
     46. Different non-integer time_scales gives the same result with predict results (test_predict.R:474:3) - Reason: On CRAN
    
     47. print.ddhazard_boot gives the expected output (test_print.R:39:3) - Reason: On CRAN
    
     48. Print function for PF objects gives previous results (test_print.R:89:3) - Reason: On CRAN
    
     49. Gets previous results with Rossi (test_residuals.R:209:3) - Reason: On CRAN
    
     50. Get prevoius residuals with whas500 (test_residuals.R:236:3) - Reason: On CRAN
    
     51. Testing util functions to sim series for tests (test_test_utils.R:28:3) - Reason: On CRAN
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Error (test_design_mat_and_risk_obj.R:583:3): Permutating gives the data f
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:583:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ── 2. Error (test_design_mat_and_risk_obj.R:644:3): Ordering gives the data fram
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:644:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: tests
Result: ERROR
     Running 'testthat.R'
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # Had the same issue as in this thread: https://github.com/hadley/testthat/issues/86
     > # or maybe https://github.com/r-lib/devtools/issues/1526
     > Sys.unsetenv("R_TESTS")
     >
     > options(deparse.max.lines = 5, testthat.summary.max_reports = 1000L)
     > testthat::test_check("dynamichazard", reporter = "summary")
     Loading required package: dynamichazard
     Loading required package: survival
     Tracing function "expect_known_value" in package "testthat"
     Tracing function "expect_known_output" in package "testthat"
     Loading required package: DBI
     GMA:
     Running tests for GMA: ..................
     LAPACK_BLAS:
     Testing LAPACK wrapper functions: ..............................................
     PF:
     Running test_PF: ........................................................................................................................................................................................................SS...SSSSSSSS..S..SS..SSSSSSSSSSSS
     SMA:
     Testing SMA: ................S..............
     UKF:
     Testing UKF: .........................
     bigglm_wrapper:
     Testing bigglm_wrapper: ......SS
     boot_est:
     Testing boot: ...S..................................................................................................................................................................................................................................................................................................................................................................................................................
     cloglog:
     testing cloglog link function: ....S
     cpp_sample_funcs:
     Testing cpp sampling functions: S..S.............................................................S....
     cpp_utils:
     Running test_cpp_utils.R:: .S............
     ddhazard_n_EKF:
     Testing ddhazard w/ generic things and w/ the the EKF: .....................S................
     design_mat_and_risk_obj:
     Testing design_mat_and_risk_obj: ..................................................................................................................................................................................................................................................................................................................................................1...............................................2......................................................
     fixed_effects_in_E_step:
     Testing fixed_effects_in_E_step: .........
     fixed_effects_in_M_step:
     Testing test_fixed_effects_in_M_step: ..........S..
     get_start_values:
     Testing 'get_start_values': ....................
     hatvalues:
     Running tests for hatvalues: ....
     help_page_examples:
     Testing examples in man files: .......S.S....SSSS........S
     loglike:
     Testing loglike: ........................
     options:
     Testing options: .
     parallelglm:
     Testing parallelglm vs. glm: ................................................S
     plot:
     Testing plot functions: ......................................
     predict:
     Testing predict: ...............................................................................SS
     print:
     Testing print function: ...SS.....
     residuals:
     Testing residuals functions: ..................................................................................................................................................................................................SS
     shiny_app:
     Testing shiny app: ..
     static_glm:
     Testing static_glm: .............................
     summary:
     Testing summary function: .................
     test_utils:
     Testing test_utils: ............S......................................
     weights:
     Testing weights in fit: ................
    
     ══ Skipped ═════════════════════════════════════════════════════════════════════
     1. PF_smooth gives same results (test_PF.R:71:3) - Reason: On CRAN
    
     2. Import and export PF cloud from Rcpp gives the same (test_PF.R:251:3) - Reason: On CRAN
    
     3. PF_EM gives previous results on head neck data set (test_PF.R:344:3) - Reason: On CRAN
    
     4. PF_EM gives previous results on head neck data set with fixed effects and the logit model (test_PF.R:411:3) - Reason: On CRAN
    
     5. compute_PF_summary_stats gives previous results (test_PF.R:436:3) - Reason: On CRAN
    
     6. 'get_cloud_means' and 'get_cloud_quantiles' gives previous results (test_PF.R:510:3) - Reason: On CRAN
    
     7. 'get_ancestors' yields the correct result (test_PF.R:560:3) - Reason: On CRAN
    
     8. ´est_params_dens´ gives the same as a R version (test_PF.R:582:3) - Reason: On CRAN
    
     9. fixed effect estimation gives the same as an R implementation (test_PF.R:630:3) - Reason: On CRAN
    
     10. A few iterations with `type = "VAR"' yields the same as before (test_PF.R:711:3) - Reason: On CRAN
    
     11. PF_EM gives the same with restricted and unrestricted model when we estimate all the parameters (test_PF.R:783:3) - Reason: On CRAN
    
     12. Using `n_smooth_final` works as expected and yields previous results (test_PF.R:896:3) - Reason: On CRAN
    
     13. sampling with a t-distribution gives previous results (test_PF.R:964:3) - Reason: On CRAN
    
     14. 'PF_forward_filter' gives the same as 'PF_EM' when it should (test_PF.R:1002:3) - Reason: On CRAN
    
     15. 'state_fw' gives correct results (test_PF.R:1131:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     16. 'state_bw' gives correct results (test_PF.R:1167:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     17. 'artificial_prior' gives correct results (test_PF.R:1202:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     18. 'observational_cdist' gives correct results (test_PF.R:1236:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     19. combining forward and backwards works (test_PF.R:1281:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     20. combining prior and backwards works (test_PF.R:1328:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     21. mode approximations give expected result (test_PF.R:1366:3) - Reason: !dir.exists("pf-internals") is TRUE
    
     22. 'PF_get_score_n_hess' gives the same as an R implementation (test_PF.R:1486:3) - Reason: On CRAN
    
     23. warns with randow walk model when covariates are in both fixed and random (test_PF.R:1624:3) - Reason: On CRAN
    
     24. works when there are time periods outside where we have data and with a single fixed and random effect (test_PF.R:1645:3) - Reason: On CRAN
    
     25. 'fix_seed = FALSE' yields different results at each call (test_PF.R:1670:3) - Reason: On CRAN
    
     26. Chaning the learning changes the result for the posterior approx method (test_SMA.R:120:3) - Reason: On CRAN
    
     27. bigglm and my c++ version yields similar results with offsets (test_bigglm_wrapper.R:298:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     28. bigglm and my c++ version yields similar with weights (test_bigglm_wrapper.R:328:5) - Reason: bigglm failed (likely biglm error in 0.9-1 release)
    
     29. boot yields previously computed values with pbc (test_boot_est.R:19:3) - Reason: On CRAN
    
     30. cloglog function gives previous result with simulated data using PF_EM and PF_forward_filter (test_cloglog.R:56:3) - Reason: On CRAN
    
     31. sample_indices give the same as R with same seed (test_cpp_sample_funcs.R:4:3) - Reason: On CRAN
    
     32. mvrnorm gives expected sample mean and variance (test_cpp_sample_funcs.R:51:3) - Reason: On CRAN
    
     33. 'mvtrnorm' yields close to uniform sample (test_cpp_sample_funcs.R:112:3) - Reason: On CRAN
    
     34. trunc_lp_in_exponential_dist does not truncate when not needed (test_cpp_utils.R:12:3) - Reason: On CRAN
    
     35. Different non-integer time_scales gives the same result with ddhazard (test_ddhazard_n_EKF.R:165:3) - Reason: On CRAN
    
     36. posterior_approx gives previous found values with fixed effects in M-step (test_fixed_effects_in_M_step.R:187:3) - Reason: On CRAN
    
     37. residuals.ddhazard help page examples gives the same results (test_help_page_examples.R:43:3) - Reason: On CRAN
    
     38. ddhazard_boot help page examples gives the same results (test_help_page_examples.R:67:3) - Reason: On CRAN
    
     39. PF_EM help page example runs and gives previous computed results (test_help_page_examples.R:129:3) - Reason: On CRAN
    
     40. Second example on PF help page gives the same result (test_help_page_examples.R:171:3) - Reason: On CRAN
    
     41. example in 'PF_EM' with gives previous results w/ a few iterations (test_help_page_examples.R:227:3) - Reason: On CRAN
    
     42. `PF_forward_filter` the results stated in the comments and does not alter the .Random.seed as stated on the help page (test_help_page_examples.R:358:3) - Reason: On CRAN
    
     43. 'PF_get_score_n_hess' gives previous results (test_help_page_examples.R:516:3) - Reason: On CRAN
    
     44. glm and parallelglm gives the same (test_parallelglm.R:80:3) - Reason: On CRAN
    
     45. Terms from predict with exponential outcome are correct (test_predict.R:413:3) - Reason: On CRAN
    
     46. Different non-integer time_scales gives the same result with predict results (test_predict.R:474:3) - Reason: On CRAN
    
     47. print.ddhazard_boot gives the expected output (test_print.R:39:3) - Reason: On CRAN
    
     48. Print function for PF objects gives previous results (test_print.R:89:3) - Reason: On CRAN
    
     49. Gets previous results with Rossi (test_residuals.R:209:3) - Reason: On CRAN
    
     50. Get prevoius residuals with whas500 (test_residuals.R:236:3) - Reason: On CRAN
    
     51. Testing util functions to sim series for tests (test_test_utils.R:28:3) - Reason: On CRAN
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Error (test_design_mat_and_risk_obj.R:583:3): Permutating gives the data f
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:583:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ── 2. Error (test_design_mat_and_risk_obj.R:644:3): Ordering gives the data fram
     Error: cannot mtfrm
     Backtrace:
     1. testthat::expect_true(...) test_design_mat_and_risk_obj.R:644:2
     4. base::match(X_Y_org$Y, X_Y$Y)
     6. base::mtfrm.default(...)
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT