CRAN Package Check Results for Package effectsize

Last updated on 2021-03-04 10:49:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.3 9.38 277.65 287.03 OK
r-devel-linux-x86_64-debian-gcc 0.4.3 7.71 202.16 209.87 OK
r-devel-linux-x86_64-fedora-clang 0.4.3 338.70 OK
r-devel-linux-x86_64-fedora-gcc 0.4.3 334.33 OK
r-devel-windows-ix86+x86_64 0.4.3 26.00 308.00 334.00 WARN
r-patched-linux-x86_64 0.4.3 8.91 266.61 275.52 OK
r-patched-solaris-x86 0.4.3 449.90 OK
r-release-linux-x86_64 0.4.3 10.09 267.33 277.42 OK
r-release-macos-x86_64 0.4.3 ERROR
r-release-windows-ix86+x86_64 0.4.3 17.00 225.00 242.00 WARN
r-oldrel-macos-x86_64 0.4.3 OK
r-oldrel-windows-ix86+x86_64 0.4.3 23.00 291.00 314.00 WARN

Check Details

Version: 0.4.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'anovaES.Rmd' using rmarkdown
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Loading required package: lmerTest
    
    Attaching package: 'lmerTest'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    The following object is masked from 'package:stats':
    
     step
    
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'anovaES.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'anovaES.Rmd'
    
    --- re-building 'bayesian_models.Rmd' using rmarkdown
    This is rstanarm version 2.21.1
    - See https://mc-stan.org/rstanarm/articles/priors for changes to default priors!
    - Default priors may change, so it's safest to specify priors, even if equivalent to the defaults.
    - For execution on a local, multicore CPU with excess RAM we recommend calling
     options(mc.cores = parallel::detectCores())
    
    Attaching package: 'rstanarm'
    
    The following object is masked from 'package:parameters':
    
     compare_models
    
    Note: The default CI width (currently `ci=0.89`) might change in future versions (see https://github.com/easystats/bayestestR/discussions/250). To prevent any issues, please set it explicitly when using bayestestR functions, via the 'ci' argument.
    
    Attaching package: 'car'
    
    The following object is masked from 'package:rstanarm':
    
     logit
    
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'bayesian_models.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'bayesian_models.Rmd'
    
    --- re-building 'convert.Rmd' using rmarkdown
    Note: The default CI width (currently `ci=0.89`) might change in future versions (see https://github.com/easystats/bayestestR/discussions/250). To prevent any issues, please set it explicitly when using bayestestR functions, via the 'ci' argument.
    Warning: It seems like there is not enough continuous variables in your data. Maybe you want to include the factors? We're setting `include_factors=TRUE` for you.
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'convert.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'convert.Rmd'
    
    --- re-building 'from_test_statistics.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    
    Attaching package: 'lmerTest'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    The following object is masked from 'package:stats':
    
     step
    
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'from_test_statistics.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'from_test_statistics.Rmd'
    
    --- re-building 'interpret.Rmd' using rmarkdown
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'interpret.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'interpret.Rmd'
    
    --- re-building 'simple_htests.Rmd' using rmarkdown
    For one-way between subjects designs, partial eta squared is equvilant to eta squared.
    Returning eta squared.
    Warning in wilcox.test.default(A, B) :
     cannot compute exact p-value with ties
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'simple_htests.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'simple_htests.Rmd'
    
    --- re-building 'standardize_data.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    `geom_smooth()` using formula 'y ~ x'
    Loading required package: Matrix
    
    Attaching package: 'Matrix'
    
    The following objects are masked from 'package:tidyr':
    
     expand, pack, unpack
    
    boundary (singular) fit: see ?isSingular
    boundary (singular) fit: see ?isSingular
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'standardize_data.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'standardize_data.Rmd'
    
    --- re-building 'standardize_parameters.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    Loading required package: lmerTest
    
    Attaching package: 'lmerTest'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    The following object is masked from 'package:stats':
    
     step
    
    boundary (singular) fit: see ?isSingular
    Warning: The following within-group terms have between-group variance:
     vs
    This can inflate standardized within-group parameters associated with
    these terms. See help("demean", package = "parameters") for modeling
    between- and within-subject effects.
    Loading required namespace: performance
    pandoc.exe: Unknown extension: gfm_auto_identifiers
    Error: processing vignette 'standardize_parameters.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 7
    --- failed re-building 'standardize_parameters.Rmd'
    
    SUMMARY: processing the following files failed:
     'anovaES.Rmd' 'bayesian_models.Rmd' 'convert.Rmd'
     'from_test_statistics.Rmd' 'interpret.Rmd' 'simple_htests.Rmd'
     'standardize_data.Rmd' 'standardize_parameters.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.3
Check: package dependencies
Result: ERROR
    Package required and available but unsuitable version: ‘parameters’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-x86_64