CRAN Package Check Results for Package medflex

Last updated on 2018-08-21 16:50:30 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6-4 7.62 107.85 115.47 ERROR
r-devel-linux-x86_64-debian-gcc 0.6-4 6.58 85.57 92.15 ERROR
r-devel-linux-x86_64-fedora-clang 0.6-4 87.23 ERROR
r-devel-linux-x86_64-fedora-gcc 0.6-4 91.55 ERROR
r-devel-windows-ix86+x86_64 0.6-4 20.00 164.00 184.00 OK
r-patched-linux-x86_64 0.6-4 5.30 91.35 96.65 ERROR
r-patched-solaris-x86 0.6-4 156.20 ERROR
r-release-linux-x86_64 0.6-4 6.35 91.24 97.59 ERROR
r-release-windows-ix86+x86_64 0.6-4 18.00 140.00 158.00 OK
r-release-osx-x86_64 0.6-4 OK
r-oldrel-windows-ix86+x86_64 0.6-4 10.00 114.00 124.00 OK
r-oldrel-osx-x86_64 0.6-4 NOTE

Check Details

Version: 0.6-4
Check: examples
Result: ERROR
    Running examples in ‘medflex-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: neWeight.default
    > ### Title: Expand the dataset and calculate ratio-of-mediator probability
    > ### weights
    > ### Aliases: neWeight.default
    >
    > ### ** Examples
    >
    > data(UPBdata)
    >
    > ## example using glm
    > fit.glm <- glm(negaff ~ att + gender + educ + age, data = UPBdata)
    > weightData <- neWeight(fit.glm, nRep = 2)
    >
    > ## example using vglm (yielding identical results as with glm)
    > library(VGAM)
    Loading required package: stats4
    Loading required package: splines
    > fit.vglm <- vglm(negaff ~ att + gender + educ + age,
    + family = gaussianff, data = UPBdata)
    Error in vglm(negaff ~ att + gender + educ + age, family = gaussianff, :
     object 'gaussianff' not found
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.6-4
Check: examples
Result: ERROR
    Running examples in ‘medflex-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: neWeight.default
    > ### Title: Expand the dataset and calculate ratio-of-mediator probability
    > ### weights
    > ### Aliases: neWeight.default
    >
    > ### ** Examples
    >
    > data(UPBdata)
    >
    > ## example using glm
    > fit.glm <- glm(negaff ~ att + gender + educ + age, data = UPBdata)
    > weightData <- neWeight(fit.glm, nRep = 2)
    >
    > ## example using vglm (yielding identical results as with glm)
    > library(VGAM)
    Loading required package: stats4
    Loading required package: splines
    > fit.vglm <- vglm(negaff ~ att + gender + educ + age,
    + family = gaussianff, data = UPBdata)
    Error in vglm(negaff ~ att + gender + educ + age, family = gaussianff, :
     object 'gaussianff' not found
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 0.6-4
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Effect decomposition on the scale of the linear predictor
    conditional on: gender, educ, age
    with x* = 0, x = 1
    
    Effect decomposition on exp(scale of the linear predictor)
    conditional on: gender, educ, age
    with x* = 0, x = 1
    
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'medflex.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `nccmath.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.12 ^^M
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64