CRAN Package Check Results for Package metacoder

Last updated on 2018-08-15 08:48:49 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.1 19.47 205.50 224.97 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.1 19.39 159.23 178.62 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.1 194.37 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2.1 268.40 ERROR
r-devel-windows-ix86+x86_64 0.2.1 43.00 266.00 309.00 ERROR
r-patched-linux-x86_64 0.2.1 23.91 203.01 226.92 ERROR
r-release-linux-x86_64 0.2.1 19.66 202.95 222.61 ERROR
r-release-windows-ix86+x86_64 0.2.1 44.00 309.00 353.00 ERROR
r-release-osx-x86_64 0.2.1 NOTE
r-oldrel-windows-ix86+x86_64 0.2.1 51.00 448.00 499.00 ERROR
r-oldrel-osx-x86_64 0.2.1 NOTE

Check Details

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [52s/61s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     ── 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ── 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     ── 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [41s/61s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     ── 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ── 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     ── 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.1
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘ggrepel’ ‘reshape’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [41s/41s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     ── 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ── 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     ── 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [60s/67s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     ── 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ── 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     ── 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.1
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [44s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     -- 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     -- 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     -- 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     == testthat results ===========================================================
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.1
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [47s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     -- 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     -- 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     -- 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     == testthat results ===========================================================
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [56s/62s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     ── 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ── 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     ── 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [56s/61s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     Warning message:
     In stri_count_regex(string, pattern, opts_regex = opts(pattern)) :
     argument is not an atomic vector; coercing
     >
     > test_check("metacoder")
     ── 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ── 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     ── 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.1
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [52s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     >
     > test_check("metacoder")
     -- 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     -- 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     -- 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     == testthat results ===========================================================
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.2.1
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [60s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     >
     > test_check("metacoder")
     -- 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     -- 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     -- 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     == testthat results ===========================================================
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.2.1
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [64s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     >
     > test_check("metacoder")
     -- 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     -- 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     -- 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     == testthat results ===========================================================
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.1
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [76s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > suppressPackageStartupMessages(library(metacoder))
     >
     > test_check("metacoder")
     -- 1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     -- 2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--pars
     `result_from_file <- parse_mothur_tax_summary(file = "example_data/mothur_summary.txt")` did not produce any warnings.
    
     -- 3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers
     `result <- parse_mothur_tax_summary(text = raw_data)` did not produce any warnings.
    
     == testthat results ===========================================================
     OK: 96 SKIPPED: 1 FAILED: 3
     1. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#78)
     2. Failure: Mothur classify.seqs *.tax.summary detailed parsing (@test--parsers_and_writers.R#79)
     3. Failure: Mothur classify.seqs *.tax.summary simple parsing (@test--parsers_and_writers.R#97)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64