CRAN Package Check Results for Package move

Last updated on 2021-09-27 23:50:46 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.0.6 38.41 347.57 385.98 OK
r-devel-linux-x86_64-debian-gcc 4.0.6 32.53 247.83 280.36 OK
r-devel-linux-x86_64-fedora-clang 4.0.6 445.28 OK
r-devel-linux-x86_64-fedora-gcc 4.0.6 450.32 OK
r-devel-windows-x86_64 4.0.6 42.00 346.00 388.00 ERROR
r-devel-windows-x86_64-gcc10-UCRT 4.0.6 OK
r-patched-linux-x86_64 4.0.6 44.58 326.30 370.88 OK
r-patched-solaris-x86 4.0.6 533.70 OK
r-release-linux-x86_64 4.0.6 36.69 331.86 368.55 OK
r-release-macos-arm64 4.0.6 NOTE
r-release-macos-x86_64 4.0.6 OK
r-release-windows-ix86+x86_64 4.0.6 71.00 495.00 566.00 NOTE
r-oldrel-macos-x86_64 4.0.6 OK
r-oldrel-windows-ix86+x86_64 4.0.6 53.00 504.00 557.00 NOTE

Check Details

Version: 4.0.6
Check: examples
Result: ERROR
    Running examples in 'move-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: thinTrackTime
    > ### Title: Thinning trajectories to a specific time interval or distance.
    > ### Aliases: thinTrackTime thinDistanceAlongTrack
    > ### thinTrackTime,.MoveTrackSingle-method
    > ### thinDistanceAlongTrack,.MoveTrackSingle-method
    >
    > ### ** Examples
    >
    > data("leroy")
    > leroysub <- leroy[1:200]
    > ### selecting those segments that have a time interval of 15mins pulsminus 5mins
    > thintime <- thinTrackTime(leroysub, interval = as.difftime(15, units='mins'),
    + tolerance = as.difftime(5, units='mins'))
    Error in validityMethod(as(object, superClass)) :
     Burst ids need to be one shorter than the number of coordinates since it is a segment property
    Calls: thinTrackTime ... validObject -> anyStrings -> isTRUE -> validityMethod
    Execution halted
Flavor: r-devel-windows-x86_64

Version: 4.0.6
Check: tests
Result: ERROR
     Running 'test-all.R' [109s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("move")
     Loading required package: move
     Loading required package: geosphere
     Loading required package: sp
     Loading required package: raster
     Loading required package: rgdal
     Please note that rgdal will be retired by the end of 2023,
     plan transition to sf/stars/terra functions using GDAL and PROJ
     at your earliest convenience.
    
     rgdal: version: 1.5-27, (SVN revision 1148)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
     Path to GDAL shared files: D:/temp/RtmpWCUGCm/RLIBS_180b0132578/rgdal/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
     Path to PROJ shared files: D:/temp/RtmpWCUGCm/RLIBS_180b0132578/rgdal/proj
     PROJ CDN enabled: FALSE
     Linking to sp version:1.4-5
     To mute warnings of possible GDAL/OSR exportToProj4() degradation,
     use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
     Overwritten PROJ_LIB was D:/temp/RtmpWCUGCm/RLIBS_180b0132578/rgdal/proj
     List of 2
     $ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
     $ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
     List of 2
     $ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
     $ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
     List of 2
     $ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
     ..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
     $ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
     ..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
     class : Move
     features : 919
     extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
     crs : +proj=longlat +datum=WGS84 +no_defs
     variables : 17
     names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
     min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
     max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
     timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59 Time difference of 21 days (start ... end, duration)
     sensors : gps
     indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
     indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
     unused rec. : 1071
     study name : Urban fisher GPS tracking
     date created: 2020-06-24 15:04:52
     class : DBBMM
     dimensions : 42, 45, 1890 (nrow, ncol, ncell)
     resolution : 759.9677, 759.9677 (x, y)
     extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
     crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
     source : memory
     names : layer
     values : 0, 0.06319155 (min, max)
    
     List of 2
     $ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
     $ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
     List of 2
     $ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
     $ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
     List of 2
     $ Leroy : POSIXct[1:919], format: "2009-02-11 13:16:45" "2009-02-11 13:31:38" ...
     $ Ricky.T: POSIXct[1:1000], format: "2010-02-09 18:01:23" "2010-02-09 18:28:56" ...
     List of 2
     $ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
     $ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
     Formal class '.unUsedRecords' [package "move"] with 3 slots
     ..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
     ..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
     ..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
     .. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
     .. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
     .. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
     .. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
     .. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
     .. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
     .. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
     .. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
     .. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
     .. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
     Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
     ..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
     .. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
     ..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 01:00:01" "2009-02-11 01:15:01" ...
     ..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
     ..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
     .. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
     .. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
     .. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
     .. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
     .. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
     .. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
     .. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
     .. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
     .. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
     .. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
     .. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     .. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
     ... computing starting delimiters
     [1] 0 -0.0000e+00 4 919
     [1] 1 -1.5574e+00 4 674
     [1] 2 -1.3639e+00 4 66
     [1] 3 -1.0174e+00 4 45
     [1] 4 -8.4560e-01 4 23
     [1] 5 -7.7790e-01 4 13
     [1] 6 -7.5598e-01 4 10
     [1] 7 -7.4796e-01 4 8
     [1] 8 -7.4349e-01 4 13
     [1] 9 -7.3983e-01 4 11
     [1] 10 -7.3618e-01 4 7
     [1] 11 -7.3268e-01 4 16
     [1] 12 -7.2911e-01 4 6
     [1] 13 -7.2514e-01 4 9
     [1] 14 -7.2179e-01 4 9
     [1] 15 -7.1882e-01 4 9
     [1] 16 -7.1578e-01 4 5
     [1] 17 -7.1345e-01 4 5
     [1] 18 -7.1146e-01 4 1
     [1] 19 -7.1022e-01 4 5
     [1] 20 -7.0936e-01 4 4
     [1] 21 -7.0868e-01 4 5
     [1] 22 -7.0826e-01 4 1
     [1] 23 -7.0798e-01 4 3
     [1] 24 -7.0791e-01 4 1
     [1] 25 -7.0772e-01 4 1
     [1] 26 -7.0767e-01 4 2
     [1] 27 -7.0760e-01 4 0
     [1] 28 -7.0758e-01 4 0
     [1] 29 -7.0757e-01 4 0
     [1] ... Stable clustering
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     username:
     password:
     == Skipped tests ===============================================================
     * On CRAN (2)
     * On Windows (1)
     * fails on old sp version (1)
     * provides a problem that needs solving (1)
     * will only work with testthat .11 (1)
    
     == Failed tests ================================================================
     -- Error (???): D:/temp/RtmpOUPU2f/R.INSTALL87c018ae36b8/move/man/thinTrack.Rd --
     Error: Burst ids need to be one shorter than the number of coordinates since it is a segment property
     Backtrace:
     x
     1. +-move::thinTrackTime(...)
     2. \-move::thinTrackTime(...)
     3. \-base::lapply(...)
     4. \-move:::FUN(X[[i]], ...)
     5. +-move::burst(x, factor(j, levels = c("notSelected", "selected")))
     6. \-move::burst(x, factor(j, levels = c("notSelected", "selected")))
     7. \-methods::new(...)
     8. +-methods::initialize(value, ...)
     9. \-methods::initialize(value, ...)
     10. \-methods::validObject(.Object)
     11. +-methods:::anyStrings(validityMethod(as(object, superClass)))
     12. | \-base::isTRUE(x)
     13. \-move:::validityMethod(as(object, superClass))
    
     [ FAIL 1 | WARN 268 | SKIP 6 | PASS 492 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 4.0.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'browseMovebank.Rmd' using rmarkdown
    --- finished re-building 'browseMovebank.Rmd'
    
    --- re-building 'move.Rmd' using rmarkdown
    Loading required package: geosphere
    Loading required package: sp
    Loading required package: raster
    Loading required package: rgdal
    Please note that rgdal will be retired by the end of 2023,
    plan transition to sf/stars/terra functions using GDAL and PROJ
    at your earliest convenience.
    
    rgdal: version: 1.5-27, (SVN revision 1148)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
    Path to GDAL shared files: d:/RCompile/CRANpkg/lib/4.2/rgdal/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
    Path to PROJ shared files: d:/RCompile/CRANpkg/lib/4.2/rgdal/proj
    PROJ CDN enabled: FALSE
    Linking to sp version:1.4-5
    To mute warnings of possible GDAL/OSR exportToProj4() degradation,
    use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
    Overwritten PROJ_LIB was d:/RCompile/CRANpkg/lib/4.2/rgdal/proj
    
    Attaching package: 'lubridate'
    
    The following objects are masked from 'package:raster':
    
     intersect, union
    
    The following objects are masked from 'package:base':
    
     date, intersect, setdiff, union
    
    Google's Terms of Service: https://cloud.google.com/maps-platform/terms/.
    Please cite ggmap if you use it! See citation("ggmap") for details.
    Loading required package: mapproj
    Loading required package: maps
    Checking rgeos availability: TRUE
    Please note that 'maptools' will be retired by the end of 2023,
    plan transition at your earliest convenience;
    some functionality will be moved to 'sp'.
    Computational size: 1.5e+08
    Warning in proj4string(object) :
     CRS object has comment, which is lost in output
    Warning in .local(object, raster, location.error = location.error, ext = ext, :
     Some burst are omitted for variance calculation since there are not segements of interest
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 1.7e+07
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 3.4e+07
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 3.7e+07
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 2.9e+07
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 3.6e+07
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 1.3e+07
    Computational size: 1.7e+07
    Computational size: 1.5e+07
    Computational size: 6.7e+06
    Computational size: 7.0e+07
    Computational size: 2.2e+09
    Computational size: 7.3e+06
    Warning in proj4string(object) :
     CRS object has comment, which is lost in output
    Warning in .local(object, raster, location.error = location.error, ext = ext, :
     Some burst are omitted for variance calculation since there are not segements of interest
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 8.9e+05
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 1.8e+06
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 2.0e+06
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 1.6e+06
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 1.9e+06
    Warning in FUN(X[[i]], ...) :
     CRS object has comment, which is lost in output
    Computational size: 7.1e+05
    Quitting from lines 737-740 (move.Rmd)
    Error: processing vignette 'move.Rmd' failed with diagnostics:
    Burst ids need to be one shorter than the number of coordinates since it is a segment property
    --- failed re-building 'move.Rmd'
    
    SUMMARY: processing the following file failed:
     'move.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64

Version: 4.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ggplot2’
Flavor: r-release-macos-arm64

Version: 4.0.6
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     R 2.0Mb
Flavors: r-release-macos-arm64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64