CRAN Package Check Results for Package ncdf4.helpers

Last updated on 2019-09-24 10:51:26 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3-3 2.42 21.17 23.59 ERROR
r-devel-linux-x86_64-debian-gcc 0.3-3 2.07 17.52 19.59 ERROR
r-devel-linux-x86_64-fedora-clang 0.3-3 29.98 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3-3 29.57 NOTE
r-devel-windows-ix86+x86_64 0.3-3 12.00 53.00 65.00 NOTE
r-patched-linux-x86_64 0.3-3 1.91 21.20 23.11 ERROR
r-patched-solaris-x86 0.3-3 44.00 NOTE
r-release-linux-x86_64 0.3-3 2.28 21.52 23.80 ERROR
r-release-windows-ix86+x86_64 0.3-3 8.00 33.00 41.00 NOTE
r-release-osx-x86_64 0.3-3 NOTE
r-oldrel-windows-ix86+x86_64 0.3-3 5.00 31.00 36.00 NOTE
r-oldrel-osx-x86_64 0.3-3 NOTE

Check Details

Version: 0.3-3
Check: R code for possible problems
Result: NOTE
    get.split.filename.cmip5: no visible global function definition for
     'tail'
    nc.conform.data : <anonymous>: no visible global function definition
     for 'na.omit'
    nc.get.subset.recursive: no visible global function definition for
     'head'
    nc.get.subset.recursive: no visible global function definition for
     'tail'
    nc.put.subset.recursive: no visible global function definition for
     'head'
    nc.put.subset.recursive: no visible global function definition for
     'tail'
    Undefined global functions or variables:
     head na.omit tail
    Consider adding
     importFrom("stats", "na.omit")
     importFrom("utils", "head", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.3-3
Check: tests
Result: ERROR
     Running 'bootstrap.R' [1s/1s]
     Running 'test_file_functions.R' [0s/1s]
     Running 'test_simple_functions.R' [0s/1s]
    Running the tests in 'tests/bootstrap.R' failed.
    Complete output:
     > if(require("RUnit", quietly=TRUE)) {
     + library(ncdf4.helpers)
     + library(proj4)
     +
     + ## Run all the tests
     + wd <- getwd()
     + testsuite <- defineTestSuite("ncdf4.helpers", dirs=wd, testFileRegexp = "^test_.+.R$", testFuncRegexp = "^ncdf4.helpers.test.+")
     + ncdf4.helpers.test.result <- runTestSuite(testsuite, useOwnErrorHandler=F)
     + printTextProtocol(ncdf4.helpers.test.result)
     + stopifnot(ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == 0)
     + }
    
    
     Executing test function ncdf4.helpers.test.nc.get.climatology.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.compress.dims ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.coordinate.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes.from.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.for.axis ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.proj4.string ... Timing stopped at: 0.012 0 0.012
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.time.series ... Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.var.subset.by.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.variable.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.write.functions ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.get.f.step.size ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.is.regular.dimension ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.make.time.bounds ... Error in match.arg(unit) : 'arg' should be one of "year", "month"
     done successfully.
    
     RUNIT TEST PROTOCOL -- Sun Sep 22 23:43:12 2019
     ***********************************************
     Number of test functions: 16
     Number of errors: 0
     Number of failures: 1
    
    
     1 Test Suite :
     ncdf4.helpers - 16 test functions, 0 errors, 1 failure
     FAILURE in ncdf4.helpers.test.nc.get.proj4.string: Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
    
    
    
     Details
     ***************************
     Test Suite: ncdf4.helpers
     Test function regexp: ^ncdf4.helpers.test.+
     Test file regexp: ^test_.+.R$
     Involved directory:
     /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ncdf4.helpers.Rcheck/tests
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_file_functions.R
     ncdf4.helpers.test.nc.get.climatology.bounds.var.list: (1 checks) ... OK (0.03 seconds)
     ncdf4.helpers.test.nc.get.compress.dims: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.coordinate.axes: (1 checks) ... OK (0.08 seconds)
     ncdf4.helpers.test.nc.get.dim.axes: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.axes.from.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.bounds.var.list: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.for.axis: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.proj4.string: FAILURE !! (check number 2)
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     ncdf4.helpers.test.nc.get.time.series: (12 checks) ... OK (0.05 seconds)
     ncdf4.helpers.test.nc.get.var.subset.by.axes: (1 checks) ... OK (0.02 seconds)
     ncdf4.helpers.test.nc.get.variable.list: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.write.functions: (2 checks) ... OK (0.04 seconds)
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_simple_functions.R
     ncdf4.helpers.test.get.f.step.size: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.is.regular.dimension: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.make.time.bounds: (2 checks) ... OK (0.01 seconds)
     Error: ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == .... is not TRUE
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3-3
Check: tests
Result: ERROR
     Running ‘bootstrap.R’ [1s/1s]
     Running ‘test_file_functions.R’ [0s/1s]
     Running ‘test_simple_functions.R’ [0s/1s]
    Running the tests in ‘tests/bootstrap.R’ failed.
    Complete output:
     > if(require("RUnit", quietly=TRUE)) {
     + library(ncdf4.helpers)
     + library(proj4)
     +
     + ## Run all the tests
     + wd <- getwd()
     + testsuite <- defineTestSuite("ncdf4.helpers", dirs=wd, testFileRegexp = "^test_.+.R$", testFuncRegexp = "^ncdf4.helpers.test.+")
     + ncdf4.helpers.test.result <- runTestSuite(testsuite, useOwnErrorHandler=F)
     + printTextProtocol(ncdf4.helpers.test.result)
     + stopifnot(ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == 0)
     + }
    
    
     Executing test function ncdf4.helpers.test.nc.get.climatology.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.compress.dims ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.coordinate.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes.from.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.for.axis ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.proj4.string ... Timing stopped at: 0.01 0 0.01
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.time.series ... Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.var.subset.by.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.variable.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.write.functions ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.get.f.step.size ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.is.regular.dimension ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.make.time.bounds ... Error in match.arg(unit) : 'arg' should be one of "year", "month"
     done successfully.
    
     RUNIT TEST PROTOCOL -- Mon Sep 23 21:33:01 2019
     ***********************************************
     Number of test functions: 16
     Number of errors: 0
     Number of failures: 1
    
    
     1 Test Suite :
     ncdf4.helpers - 16 test functions, 0 errors, 1 failure
     FAILURE in ncdf4.helpers.test.nc.get.proj4.string: Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
    
    
    
     Details
     ***************************
     Test Suite: ncdf4.helpers
     Test function regexp: ^ncdf4.helpers.test.+
     Test file regexp: ^test_.+.R$
     Involved directory:
     /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_file_functions.R
     ncdf4.helpers.test.nc.get.climatology.bounds.var.list: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.compress.dims: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.coordinate.axes: (1 checks) ... OK (0.07 seconds)
     ncdf4.helpers.test.nc.get.dim.axes: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.axes.from.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.bounds.var.list: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.for.axis: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.proj4.string: FAILURE !! (check number 2)
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     ncdf4.helpers.test.nc.get.time.series: (12 checks) ... OK (0.07 seconds)
     ncdf4.helpers.test.nc.get.var.subset.by.axes: (1 checks) ... OK (0.03 seconds)
     ncdf4.helpers.test.nc.get.variable.list: (2 checks) ... OK (0.04 seconds)
     ncdf4.helpers.test.write.functions: (2 checks) ... OK (0.04 seconds)
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_simple_functions.R
     ncdf4.helpers.test.get.f.step.size: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.is.regular.dimension: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.make.time.bounds: (2 checks) ... OK (0.01 seconds)
     Error: ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == .... is not TRUE
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3-3
Check: tests
Result: ERROR
     Running ‘bootstrap.R’ [1s/1s]
     Running ‘test_file_functions.R’ [0s/1s]
     Running ‘test_simple_functions.R’ [0s/1s]
    Running the tests in ‘tests/bootstrap.R’ failed.
    Complete output:
     > if(require("RUnit", quietly=TRUE)) {
     + library(ncdf4.helpers)
     + library(proj4)
     +
     + ## Run all the tests
     + wd <- getwd()
     + testsuite <- defineTestSuite("ncdf4.helpers", dirs=wd, testFileRegexp = "^test_.+.R$", testFuncRegexp = "^ncdf4.helpers.test.+")
     + ncdf4.helpers.test.result <- runTestSuite(testsuite, useOwnErrorHandler=F)
     + printTextProtocol(ncdf4.helpers.test.result)
     + stopifnot(ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == 0)
     + }
    
    
     Executing test function ncdf4.helpers.test.nc.get.climatology.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.compress.dims ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.coordinate.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes.from.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.for.axis ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.proj4.string ... Timing stopped at: 0.012 0 0.02
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.time.series ... Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.var.subset.by.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.variable.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.write.functions ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.get.f.step.size ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.is.regular.dimension ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.make.time.bounds ... Error in match.arg(unit) : 'arg' should be one of "year", "month"
     done successfully.
    
     RUNIT TEST PROTOCOL -- Mon Sep 23 15:21:09 2019
     ***********************************************
     Number of test functions: 16
     Number of errors: 0
     Number of failures: 1
    
    
     1 Test Suite :
     ncdf4.helpers - 16 test functions, 0 errors, 1 failure
     FAILURE in ncdf4.helpers.test.nc.get.proj4.string: Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
    
    
    
     Details
     ***************************
     Test Suite: ncdf4.helpers
     Test function regexp: ^ncdf4.helpers.test.+
     Test file regexp: ^test_.+.R$
     Involved directory:
     /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_file_functions.R
     ncdf4.helpers.test.nc.get.climatology.bounds.var.list: (1 checks) ... OK (0.04 seconds)
     ncdf4.helpers.test.nc.get.compress.dims: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.coordinate.axes: (1 checks) ... OK (0.12 seconds)
     ncdf4.helpers.test.nc.get.dim.axes: (2 checks) ... OK (0.02 seconds)
     ncdf4.helpers.test.nc.get.dim.axes.from.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.bounds.var.list: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.for.axis: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.proj4.string: FAILURE !! (check number 2)
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     ncdf4.helpers.test.nc.get.time.series: (12 checks) ... OK (0.07 seconds)
     ncdf4.helpers.test.nc.get.var.subset.by.axes: (1 checks) ... OK (0.02 seconds)
     ncdf4.helpers.test.nc.get.variable.list: (2 checks) ... OK (0.02 seconds)
     ncdf4.helpers.test.write.functions: (2 checks) ... OK (0.03 seconds)
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_simple_functions.R
     ncdf4.helpers.test.get.f.step.size: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.is.regular.dimension: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.make.time.bounds: (2 checks) ... OK (0.01 seconds)
     Error: ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == .... is not TRUE
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.3-3
Check: tests
Result: ERROR
     Running ‘bootstrap.R’ [1s/1s]
     Running ‘test_file_functions.R’ [0s/1s]
     Running ‘test_simple_functions.R’ [0s/1s]
    Running the tests in ‘tests/bootstrap.R’ failed.
    Complete output:
     > if(require("RUnit", quietly=TRUE)) {
     + library(ncdf4.helpers)
     + library(proj4)
     +
     + ## Run all the tests
     + wd <- getwd()
     + testsuite <- defineTestSuite("ncdf4.helpers", dirs=wd, testFileRegexp = "^test_.+.R$", testFuncRegexp = "^ncdf4.helpers.test.+")
     + ncdf4.helpers.test.result <- runTestSuite(testsuite, useOwnErrorHandler=F)
     + printTextProtocol(ncdf4.helpers.test.result)
     + stopifnot(ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == 0)
     + }
    
    
     Executing test function ncdf4.helpers.test.nc.get.climatology.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.compress.dims ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.coordinate.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.axes.from.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.bounds.var.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.for.axis ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.dim.names ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.proj4.string ... Timing stopped at: 0.011 0 0.011
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.time.series ... Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     Error in nc.get.time.series(f1, "foo") :
     Variable 'foo' not found in file.
     Error in nc.get.time.series(f1, time.dim.name = "foo") :
     Couldn't find dimension 'foo' in file.
     done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.var.subset.by.axes ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.get.variable.list ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.write.functions ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.get.f.step.size ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.is.regular.dimension ... done successfully.
    
    
    
     Executing test function ncdf4.helpers.test.nc.make.time.bounds ... Error in match.arg(unit) : 'arg' should be one of "year", "month"
     done successfully.
    
     RUNIT TEST PROTOCOL -- Tue Sep 24 07:23:41 2019
     ***********************************************
     Number of test functions: 16
     Number of errors: 0
     Number of failures: 1
    
    
     1 Test Suite :
     ncdf4.helpers - 16 test functions, 0 errors, 1 failure
     FAILURE in ncdf4.helpers.test.nc.get.proj4.string: Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
    
    
    
     Details
     ***************************
     Test Suite: ncdf4.helpers
     Test function regexp: ^ncdf4.helpers.test.+
     Test file regexp: ^test_.+.R$
     Involved directory:
     /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_file_functions.R
     ncdf4.helpers.test.nc.get.climatology.bounds.var.list: (1 checks) ... OK (0.03 seconds)
     ncdf4.helpers.test.nc.get.compress.dims: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.coordinate.axes: (1 checks) ... OK (0.1 seconds)
     ncdf4.helpers.test.nc.get.dim.axes: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.axes.from.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.bounds.var.list: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.for.axis: (1 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.dim.names: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.nc.get.proj4.string: FAILURE !! (check number 2)
     Error in checkEquals((latlon.data$x + 360)%%360, lon.dat[indices], tolerance = 1e-05) :
     Mean relative difference: 0.4266635
    
     ncdf4.helpers.test.nc.get.time.series: (12 checks) ... OK (0.04 seconds)
     ncdf4.helpers.test.nc.get.var.subset.by.axes: (1 checks) ... OK (0.02 seconds)
     ncdf4.helpers.test.nc.get.variable.list: (2 checks) ... OK (0.01 seconds)
     ncdf4.helpers.test.write.functions: (2 checks) ... OK (0.03 seconds)
     ---------------------------
     Test file: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ncdf4.helpers.Rcheck/tests/test_simple_functions.R
     ncdf4.helpers.test.get.f.step.size: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.is.regular.dimension: (2 checks) ... OK (0 seconds)
     ncdf4.helpers.test.nc.make.time.bounds: (2 checks) ... OK (0.01 seconds)
     Error: ncdf4.helpers.test.result$ncdf4.helpers$nFail == 0 && ncdf4.helpers.test.result$ncdf4.helpers$nErr == .... is not TRUE
     Execution halted
Flavor: r-release-linux-x86_64