CRAN Package Check Results for Package optBiomarker

Last updated on 2018-02-18 02:47:08 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-27 6.68 77.51 84.19 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-27 5.26 60.35 65.61 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-27 104.24 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-27 96.05 NOTE
r-devel-windows-ix86+x86_64 1.0-27 11.00 82.00 93.00 NOTE
r-patched-linux-x86_64 1.0-27 4.03 79.17 83.20 NOTE
r-patched-solaris-x86 1.0-27 158.80 NOTE
r-release-linux-x86_64 1.0-27 5.11 78.61 83.72 NOTE
r-release-windows-ix86+x86_64 1.0-27 18.00 126.00 144.00 NOTE
r-release-osx-x86_64 1.0-27 NOTE
r-oldrel-windows-ix86+x86_64 1.0-27 10.00 112.00 122.00 NOTE
r-oldrel-osx-x86_64 1.0-27 WARN

Check Details

Version: 1.0-27
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0-27
Check: R code for possible problems
Result: NOTE
    avg2Lower: no visible global function definition for ‘optimize’
    classificationError.data.frame: no visible binding for global variable
     ‘na.omit’
    classificationError.data.frame: no visible global function definition
     for ‘terms’
    classificationError.data.frame: no visible binding for global variable
     ‘predict’
    classpredict.lda: no visible global function definition for ‘predict’
    simData: no visible global function definition for ‘rnorm’
    simData: no visible global function definition for ‘runif’
    simData: no visible global function definition for ‘var’
    tnormAvg: no visible global function definition for ‘dnorm’
    tnormAvg: no visible global function definition for ‘pnorm’
    yapprox: no visible global function definition for ‘approx’
    Undefined global functions or variables:
     approx dnorm na.omit optimize pnorm predict rnorm runif terms var
    Consider adding
     importFrom("stats", "approx", "dnorm", "na.omit", "optimize", "pnorm",
     "predict", "rnorm", "runif", "terms", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-27
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyavg2Lower: no visible global function definition for ‘optimize’
    classificationError.data.frame: no visible binding for global variable
     ‘na.omit’
    classificationError.data.frame: no visible global function definition
     for ‘terms’
    classificationError.data.frame: no visible binding for global variable
     ‘predict’
    classpredict.lda: no visible global function definition for ‘predict’
    simData: no visible global function definition for ‘rnorm’
    simData: no visible global function definition for ‘runif’
    simData: no visible global function definition for ‘var’
    tnormAvg: no visible global function definition for ‘dnorm’
    tnormAvg: no visible global function definition for ‘pnorm’
    yapprox: no visible global function definition for ‘approx’
    Undefined global functions or variables:
     approx dnorm na.omit optimize pnorm predict rnorm runif terms var
    Consider adding
     importFrom("stats", "approx", "dnorm", "na.omit", "optimize", "pnorm",
     "predict", "rnorm", "runif", "terms", "var")
    to your NAMESPACE file.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64