CRAN Package Check Results for Package picante

Last updated on 2018-04-25 14:48:25 CEST.

Check Details

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6-2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.6-2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘brglm’ ‘quantreg’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.6-2
Check: R code for possible problems
Result: NOTE
    .binomial.pd: no visible global function definition for ‘dbinom’
    .edge.children.var: no visible global function definition for
     ‘aggregate’
    .edge.children.var.ub: no visible global function definition for
     ‘reorder’
    .edge.children.var.ub: no visible global function definition for
     ‘aggregate’
    .evolve.trait: no visible global function definition for ‘reorder’
    .evolve.trait: no visible global function definition for ‘rnorm’
    .evolve.trait: no visible global function definition for ‘runif’
    .evolve.trait: no visible global function definition for ‘rlnorm’
    .evolve.trait: no visible global function definition for ‘par’
    .evolve.trait: no visible global function definition for ‘dist’
    .evolve.trait: no visible global function definition for ‘rainbow’
    .evolve.trait: no visible global function definition for ‘plot’
    .evolve.trait: no visible global function definition for ‘lines’
    .phylosor.richness: no visible global function definition for ‘as.dist’
    Kcalc: no visible global function definition for ‘coef’
    color.plot.phylo: no visible global function definition for ‘rainbow’
    color.plot.phylo: no visible global function definition for ‘par’
    color.plot.phylo: no visible global function definition for ‘title’
    color.plot.phylo: no visible global function definition for ‘legend’
    comdist: no visible global function definition for ‘as.dist’
    comdistnt: no visible global function definition for ‘weighted.mean’
    comdistnt: no visible global function definition for ‘as.dist’
    comm.phylo.cor: no visible global function definition for ‘as.dist’
    comm.phylo.cor: no visible global function definition for ‘cophenetic’
    comm.phylo.cor: no visible global function definition for ‘cor’
    comm.phylo.cor: no visible global function definition for ‘cor.test’
    comm.phylo.qr: no visible global function definition for ‘as.dist’
    comm.phylo.qr: no visible global function definition for ‘cophenetic’
    comm.phylo.qr: no visible global function definition for ‘coef’
    comm.phylo.qr: no visible global function definition for ‘rq’
    comm.phylo.qr: no visible binding for global variable ‘na.omit’
    comm.phylo.qr: no visible global function definition for ‘plot’
    comm.phylo.qr: no visible global function definition for ‘abline’
    comm.phylo.qr: no visible global function definition for ‘legend’
    cor.table: no visible global function definition for ‘cor’
    cor.table: no visible global function definition for ‘pt’
    ead: no visible global function definition for ‘reorder’
    ead: no visible global function definition for ‘aggregate’
    expected.pd: no visible global function definition for ‘dbinom’
    match.comm.dist: no visible global function definition for ‘as.dist’
    mntd: no visible global function definition for ‘weighted.mean’
    mpd: no visible global function definition for ‘weighted.mean’
    pblm: no visible global function definition for ‘model.matrix’
    pblm: no visible global function definition for ‘cov’
    pblm: no visible global function definition for ‘is’
    pblm: no visible global function definition for ‘optim’
    pblm: no visible global function definition for ‘quantile’
    pblmpredict: no visible global function definition for ‘cor’
    pblmpredict: no visible global function definition for ‘is’
    pcd: no visible global function definition for ‘is’
    pcd: no visible global function definition for ‘as.dist’
    phylosignal: no visible global function definition for ‘sd’
    phylosor: no visible global function definition for ‘as.dist’
    phylostruct: no visible binding for global variable ‘quantile’
    phylostruct: no visible global function definition for ‘quantile’
    prune.missing: no visible global function definition for ‘na.omit’
    psc: no visible global function definition for ‘is’
    pse: no visible global function definition for ‘is’
    psv: no visible global function definition for ‘is’
    psv.spp: no visible global function definition for ‘is’
    raoD: no visible global function definition for ‘cophenetic’
    readsample: no visible global function definition for ‘read.table’
    ses.mntd: no visible binding for global variable ‘sd’
    ses.mpd: no visible binding for global variable ‘sd’
    ses.pd: no visible binding for global variable ‘sd’
    specaccum.psr: no visible binding for global variable ‘sd’
    species.dist: no visible global function definition for ‘as.dist’
    species.dist: no visible global function definition for ‘dist’
    sppregs: no visible global function definition for ‘is’
    sppregs: no visible global function definition for ‘glm’
    sppregs: no visible global function definition for ‘cor’
    sppregs: no visible global function definition for ‘brglm’
    sppregs.plot: no visible global function definition for ‘par’
    sppregs.plot: no visible global function definition for ‘plot’
    sppregs.plot: no visible global function definition for ‘cor’
    sppregs.plot: no visible global function definition for ‘abline’
    traitgram: no visible global function definition for ‘par’
    traitgram: no visible global function definition for ‘plot’
    traitgram: no visible global function definition for ‘axis’
    traitgram: no visible global function definition for ‘segments’
    traitgram: no visible global function definition for ‘text’
    unifrac: no visible global function definition for ‘as.dist’
    writesample: no visible global function definition for ‘write.table’
    writetraits: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline aggregate as.dist axis brglm coef cophenetic cor cor.test cov
     dbinom dist glm is legend lines model.matrix na.omit optim par plot
     pt quantile rainbow read.table reorder rlnorm rnorm rq runif sd
     segments text title weighted.mean write.table
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "abline", "axis", "legend", "lines", "par",
     "plot", "segments", "text", "title")
     importFrom("methods", "is")
     importFrom("stats", "aggregate", "as.dist", "coef", "cophenetic",
     "cor", "cor.test", "cov", "dbinom", "dist", "glm",
     "model.matrix", "na.omit", "optim", "pt", "quantile",
     "reorder", "rlnorm", "rnorm", "runif", "sd",
     "weighted.mean")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.6-2
Check: compiled code
Result: NOTE
    File ‘picante/libs/picante.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/data/gannet/ripley/R/packages/tests-clang/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/data/gannet/ripley/R/packages/tests-devel/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See 'd:/Rcompile/CRANpkg/local/3.5/picante.Rcheck/00install.out' for details.
    Information on the location(s) of code generating the 'Note's can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to 'yes'.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-patched-linux-x86_64

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/home/ripley/R/packages/tests32/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-patched-solaris-x86

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-release-linux-x86_64

Version: 1.6-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.5/picante.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-release-osx-x86_64