CRAN Package Check Results for Package poplite

Last updated on 2018-02-25 03:55:08 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.99.19 4.18 79.90 84.08 OK
r-devel-linux-x86_64-debian-gcc 0.99.19 3.31 61.25 64.56 OK
r-devel-linux-x86_64-fedora-clang 0.99.19 75.08 WARN
r-devel-linux-x86_64-fedora-gcc 0.99.19 71.87 WARN
r-devel-windows-ix86+x86_64 0.99.19 11.00 135.00 146.00 OK
r-patched-linux-x86_64 0.99.19 2.21 83.77 85.98 OK
r-patched-solaris-x86 0.99.19 136.10 OK
r-release-linux-x86_64 0.99.19 2.55 83.10 85.65 OK
r-release-windows-ix86+x86_64 0.99.19 9.00 134.00 143.00 OK
r-release-osx-x86_64 0.99.19 WARN
r-oldrel-windows-ix86+x86_64 0.99.19 6.00 86.00 92.00 OK
r-oldrel-osx-x86_64 0.99.19 OK

Check Details

Version: 0.99.19
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘VariantAnnotation’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64

Version: 0.99.19
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: dplyr
    
    Attaching package: ‘dplyr’
    
    The following objects are masked from ‘package:stats’:
    
     filter, lag
    
    The following objects are masked from ‘package:base’:
    
     intersect, setdiff, setequal, union
    
    Loading required package: DBI
    
    Attaching package: ‘poplite’
    
    The following object is masked from ‘package:dplyr’:
    
     select
    
    The following object is masked from ‘package:stats’:
    
     filter
    
    Error in makeSchemaFromData(dna, "dna") :
     ERROR: The names of the supplied data.frame need to be modified for the database see correct.df.names
    Starting clinical
    Starting samples
    Starting dna
    Warning: call dbDisconnect() when finished working with a connection
    Error in filter_.Database(.data, .dots = compat_as_lazy_dots(...)) :
     ERROR: Cannot uniquely map columns to table, try using: tableX.columnY
    Starting gender
    Starting clinical
    Starting samples
    Starting dna
    
    Error: processing vignette 'poplite.Rnw' failed with diagnostics:
     chunk 15
    Error in library(VariantAnnotation) :
     there is no package called ‘VariantAnnotation’
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.99.19
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘poplite.Rnw’
     ...
     8 8 8 18 0 1.6844357 0.53539884 2 F
     9 9 9 20 1 0.9113913 -0.55527835 2 F
    10 10 10 12 1 0.2374303 1.77950291 1 M
    # ... with more rows
    
    > library(VariantAnnotation)
    
     When sourcing ‘poplite.R’:
    Error: there is no package called ‘VariantAnnotation’
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.99.19
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
     select
    
    The following object is masked from ‘package:stats’:
    
     filter
    
    Error in makeSchemaFromData(dna, "dna") :
     ERROR: The names of the supplied data.frame need to be modified for the database see correct.df.names
    Starting clinical
    Starting samples
    Starting dna
    Warning: call dbDisconnect() when finished working with a connection
    Error in filter_.Database(.data, .dots = compat_as_lazy_dots(...)) :
     ERROR: Cannot uniquely map columns to table, try using: tableX.columnY
    Starting gender
    Starting clinical
    Starting samples
    Starting dna
    
    Error: processing vignette 'poplite.Rnw' failed with diagnostics:
     chunk 15
    Error in library(VariantAnnotation) :
     there is no package called ‘VariantAnnotation’
    Execution halted
Flavor: r-release-osx-x86_64