CRAN Package Check Results for Package poplite

Last updated on 2018-08-20 07:47:52 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.99.19 5.22 92.26 97.48 OK
r-devel-linux-x86_64-debian-gcc 0.99.19 4.95 73.73 78.68 OK
r-devel-linux-x86_64-fedora-clang 0.99.19 117.39 OK
r-devel-linux-x86_64-fedora-gcc 0.99.19 113.96 OK
r-devel-windows-ix86+x86_64 0.99.19 13.00 164.00 177.00 OK
r-patched-linux-x86_64 0.99.19 4.13 79.01 83.14 OK
r-patched-solaris-x86 0.99.19 150.00 OK
r-release-linux-x86_64 0.99.19 4.57 78.88 83.45 OK
r-release-windows-ix86+x86_64 0.99.19 14.00 102.00 116.00 OK
r-release-osx-x86_64 0.99.19 WARN
r-oldrel-windows-ix86+x86_64 0.99.19 7.00 141.00 148.00 OK
r-oldrel-osx-x86_64 0.99.19 WARN

Check Details

Version: 0.99.19
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘VariantAnnotation’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.99.19
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘poplite.Rnw’
     ...
     8 8 8 18 0 1.68 0.535 2 F
     9 9 9 20 1 0.911 -0.555 2 F
    10 10 10 12 1 0.237 1.78 1 M
    # ... with more rows
    
    > library(VariantAnnotation)
    
     When sourcing ‘poplite.R’:
    Error: there is no package called ‘VariantAnnotation’
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.99.19
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
     select
    
    The following object is masked from ‘package:stats’:
    
     filter
    
    Error in makeSchemaFromData(dna, "dna") :
     ERROR: The names of the supplied data.frame need to be modified for the database see correct.df.names
    Starting clinical
    Starting samples
    Starting dna
    Warning: call dbDisconnect() when finished working with a connection
    Error in filter_.Database(.data, .dots = compat_as_lazy_dots(...)) :
     ERROR: Cannot uniquely map columns to table, try using: tableX.columnY
    Starting gender
    Starting clinical
    Starting samples
    Starting dna
    
    Error: processing vignette 'poplite.Rnw' failed with diagnostics:
     chunk 15
    Error in library(VariantAnnotation) :
     there is no package called ‘VariantAnnotation’
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.99.19
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘poplite.Rnw’
     ...
     8 8 8 18 0 1.6844357 0.53539884 2 F
     9 9 9 20 1 0.9113913 -0.55527835 2 F
    10 10 10 12 1 0.2374303 1.77950291 1 M
    # ... with more rows
    
    > library(VariantAnnotation)
    
     When sourcing ‘poplite.R’:
    Error: there is no package called ‘VariantAnnotation’
    Execution halted
Flavor: r-oldrel-osx-x86_64