CRAN Package Check Results for Package ppiPre

Last updated on 2018-02-25 17:49:01 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.9 8.48 97.41 105.89 WARN
r-devel-linux-x86_64-debian-gcc 1.9 6.37 77.74 84.11 WARN
r-devel-windows-ix86+x86_64 1.9 18.00 137.00 155.00 WARN
r-patched-linux-x86_64 1.9 6.64 98.35 104.99 NOTE
r-patched-solaris-x86 1.9 169.50 NOTE
r-release-linux-x86_64 1.9 7.95 97.29 105.24 NOTE
r-release-windows-ix86+x86_64 1.9 20.00 133.00 153.00 NOTE
r-release-osx-x86_64 1.9 ERROR
r-oldrel-windows-ix86+x86_64 1.9 12.00 130.00 142.00 NOTE
r-oldrel-osx-x86_64 1.9 NOTE

Check Details

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘org.Ag.eg.db’ ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’
     ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’
     ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’
     ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.9
Check: R code for possible problems
Result: NOTE
    ComputeAllEvidences: possible error in
     geneSim(as.character(Sims[[1]][i]), as.character(Sims[[2]][i]), ont =
     "BP", organism = wh_organism, measure = "Wang", drop <- dropcodes):
     unused arguments (ont = "BP", organism = wh_organism)
    ComputeAllEvidences: possible error in
     geneSim(as.character(Sims[[1]][i]), as.character(Sims[[2]][i]), ont =
     "MF", organism = wh_organism, measure = "Wang", drop <- dropcodes):
     unused arguments (ont = "MF", organism = wh_organism)
    ComputeAllEvidences: possible error in
     geneSim(as.character(Sims[[1]][i]), as.character(Sims[[2]][i]), ont =
     "CC", organism = wh_organism, measure = "Wang", drop <- dropcodes):
     unused arguments (ont = "CC", organism = wh_organism)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     'org.EcSakai.eg.db' 'org.Pf.plasmo.db'
Flavor: r-devel-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     'org.Ag.eg.db' 'org.Pt.eg.db' 'org.Rn.eg.db' 'org.Ss.eg.db'
     'org.Bt.eg.db' 'org.Ce.eg.db' 'org.Cf.eg.db' 'org.Dr.eg.db'
     'org.EcK12.eg.db' 'org.EcSakai.eg.db' 'org.Gg.eg.db' 'org.Mmu.eg.db'
     'org.Pf.plasmo.db' 'org.Xl.eg.db'
Flavor: r-release-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘GOSemSim’ ‘GO.db’
    
    Packages which this enhances but not available for checking:
     ‘KEGG.db’ ‘org.Hs.eg.db’ ‘org.Sc.sgd.db’ ‘org.Ag.eg.db’
     ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’ ‘org.At.tair.db’
     ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’
     ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’
     ‘org.Mm.eg.db’ ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     'org.Ag.eg.db' 'org.Pt.eg.db' 'org.Ss.eg.db' 'org.Bt.eg.db'
     'org.Ce.eg.db' 'org.Cf.eg.db' 'org.Dr.eg.db' 'org.EcK12.eg.db'
     'org.EcSakai.eg.db' 'org.Gg.eg.db' 'org.Mmu.eg.db' 'org.Pf.plasmo.db'
     'org.Xl.eg.db'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘KEGG.db’ ‘org.Sc.sgd.db’ ‘org.Ag.eg.db’ ‘org.Pt.eg.db’
     ‘org.Rn.eg.db’ ‘org.Ss.eg.db’ ‘org.At.tair.db’ ‘org.Bt.eg.db’
     ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’ ‘org.Dr.eg.db’
     ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’ ‘org.Mm.eg.db’
     ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavor: r-oldrel-osx-x86_64