CRAN Package Check Results for Package rentrez

Last updated on 2018-04-27 04:50:59 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 1.86 31.50 33.36 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 1.71 23.72 25.43 WARN
r-devel-linux-x86_64-fedora-clang 1.2.1 43.37 OK
r-devel-linux-x86_64-fedora-gcc 1.2.1 42.13 OK
r-devel-windows-ix86+x86_64 1.2.1 5.00 40.00 45.00 OK --no-vignettes
r-patched-linux-x86_64 1.2.1 2.06 33.93 35.99 OK
r-patched-solaris-x86 1.2.1 65.50 OK
r-release-linux-x86_64 1.2.1 1.53 33.91 35.44 OK
r-release-windows-ix86+x86_64 1.2.1 5.00 40.00 45.00 OK --no-vignettes
r-release-osx-x86_64 1.2.1 ERROR
r-oldrel-windows-ix86+x86_64 1.2.1 3.00 53.00 56.00 OK --no-vignettes
r-oldrel-osx-x86_64 1.2.1 OK

Check Details

Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 155-158 (rentrez_tutorial.Rmd)
    Error: processing vignette ‘rentrez_tutorial.Rmd’ failed with diagnostics:
    subscript out of bounds
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘rentrez-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: entrez_db_summary
    > ### Title: Retrieve summary information about an NCBI database
    > ### Aliases: entrez_db_summary
    >
    > ### ** Examples
    >
    > entrez_db_summary("pubmed")
    Error in curl::curl_fetch_memory(url, handle = handle) :
     Timeout was reached: Resolving timed out after 10002 milliseconds
    Calls: entrez_db_summary ... request_fetch -> request_fetch.write_memory -> <Anonymous>
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 22-52 (rentrez_tutorial.Rmd)
    Error: processing vignette 'rentrez_tutorial.Rmd' failed with diagnostics:
    Timeout was reached: Resolving timed out after 10000 milliseconds
    Execution halted
Flavor: r-release-osx-x86_64