CRAN Package Check Results for Package rstanarm

Last updated on 2017-08-20 10:46:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.15.3 256.98 336.64 593.61 OK
r-devel-linux-x86_64-debian-gcc 2.15.3 213.12 325.42 538.54 OK
r-devel-linux-x86_64-fedora-clang 2.15.3 1141.52 NOTE
r-devel-linux-x86_64-fedora-gcc 2.15.3 1069.15 NOTE
r-devel-windows-ix86+x86_64 2.15.3 412.00 185.00 597.00 NOTE --no-examples --no-tests --no-vignettes
r-patched-linux-x86_64 2.15.3 199.40 342.49 541.89 OK
r-patched-solaris-x86 2.15.3 1156.90 WARN
r-release-linux-x86_64 2.15.3 196.80 337.10 533.90 OK
r-release-windows-ix86+x86_64 2.15.3 556.00 258.00 814.00 NOTE --no-examples --no-tests --no-vignettes
r-release-osx-x86_64 2.15.3 ERROR
r-oldrel-windows-ix86+x86_64 2.15.3 436.00 251.00 687.00 NOTE --no-examples --no-tests --no-vignettes
r-oldrel-osx-x86_64 2.15.3 WARN

Check Details

Version: 2.15.3
Check: installed package size
Result: NOTE
     installed size is 65.0Mb
     sub-directories of 1Mb or more:
     doc 2.2Mb
     libs 61.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.15.3
Flags: --no-examples --no-tests --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 12.9Mb
     sub-directories of 1Mb or more:
     doc 2.2Mb
     libs 9.7Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.15.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 2-15 (./children/SETTINGS-knitr.txt)
    Quitting from lines NA-15 (./children/SETTINGS-knitr.txt)
    Error: processing vignette 'aov.Rmd' failed with diagnostics:
    object 'params' not found
    Execution halted
Flavors: r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.15.3
Check: examples
Result: ERROR
    Running examples in ‘rstanarm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: pp_check.stanreg
    > ### Title: Graphical posterior predictive checks
    > ### Aliases: pp_check pp_check.stanreg
    >
    > ### ** Examples
    >
    > fit <- stan_glmer(mpg ~ wt + am + (1|cyl), data = mtcars,
    + iter = 400, chains = 2) # just to keep example quick
    Error in new_CppObject_xp(fields$.module, fields$.pointer, ...) :
     c++ exception (unknown reason)
    trying deprecated constructor; please alert package maintainer
    
    SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
    
    Gradient evaluation took 0.000108 seconds
    1000 transitions using 10 leapfrog steps per transition would take 1.08 seconds.
    Adjust your expectations accordingly!
    
    
    Iteration: 1 / 400 [ 0%] (Warmup)
    [1] "Error in sampler$call_sampler(args_list[[i]]) : "
    [2] " c++ exception (unknown reason)"
    error occurred during calling the sampler; sampling not done
    Error in check_stanfit(stanfit) :
     Invalid stanfit object produced please report bug
    Calls: stan_glmer -> stan_glm.fit -> check_stanfit
    Execution halted
Flavor: r-release-osx-x86_64

Version: 2.15.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     Calls: test_check ... withCallingHandlers -> stan_glm -> stan_glm.fit -> check_stanfit
     testthat results ================================================================
     OK: 15 SKIPPED: 0 FAILED: 9
     1. Error: loo & waic throw error for non mcmc models (@test_loo.R#65)
     2. Error: loo errors if model has weights (@test_loo.R#72)
     3. Error: loo with k_threshold works for edge case(s) (@test_loo.R#118)
     4. Error: kfold throws error for non mcmc models (@test_loo.R#132)
     5. Error: kfold throws error if model has weights (@test_loo.R#144)
     6. Error: kfold works on some examples (@test_loo.R#155)
     7. Error: compare_models throws correct errors (@test_loo.R#181)
     8. Error: compare_models works (@test_loo.R#222)
     9. Error: kfold_and_reloo_data works (@test_loo.R#287)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64