CRAN Package Check Results for Package rstanarm

Last updated on 2017-06-27 00:46:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.15.3 242.75 348.18 590.92 OK
r-devel-linux-x86_64-debian-gcc 2.15.3 209.84 336.31 546.14 OK
r-devel-linux-x86_64-fedora-clang 2.15.3 1219.14 NOTE
r-devel-linux-x86_64-fedora-gcc 2.15.3 1099.20 NOTE
r-devel-windows-ix86+x86_64 2.15.3 535.00 288.00 823.00 NOTE --no-examples --no-tests --no-vignettes
r-patched-linux-x86_64 2.15.3 193.16 343.75 536.91 OK
r-patched-solaris-sparc 2.15.3 2372.50 ERROR
r-patched-solaris-x86 2.15.3 1157.60 WARN
r-release-linux-x86_64 2.15.3 189.91 355.93 545.84 OK
r-release-windows-ix86+x86_64 2.15.3 436.00 267.00 703.00 NOTE --no-examples --no-tests --no-vignettes
r-release-osx-x86_64 2.15.3 ERROR
r-oldrel-windows-ix86+x86_64 2.15.3 552.00 258.00 810.00 NOTE --no-examples --no-tests --no-vignettes
r-oldrel-osx-x86_64 2.15.3 WARN

Check Details

Version: 2.15.3
Check: installed package size
Result: NOTE
     installed size is 59.2Mb
     sub-directories of 1Mb or more:
     doc 2.2Mb
     libs 55.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.15.3
Flags: --no-examples --no-tests --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 12.6Mb
     sub-directories of 1Mb or more:
     doc 2.2Mb
     libs 9.5Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.15.3
Check: examples
Result: ERROR
    Running examples in ‘rstanarm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: example_model
    > ### Title: Example model
    > ### Aliases: example_model
    >
    > ### ** Examples
    >
    > example_model <-
    + stan_glmer(cbind(incidence, size - incidence) ~ size + period + (1|herd),
    + data = lme4::cbpp, family = binomial,
    + # this next line is only to keep the example small in size!
    + chains = 2, cores = 1, seed = 12345, iter = 500)
    
    SAMPLING FOR MODEL 'binomial' NOW (CHAIN 1).
Flavor: r-patched-solaris-sparc

Version: 2.15.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [36s/55s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # Part of the rstanarm package for estimating model parameters
     > # Copyright (C) 2015 Trustees of Columbia University
     > #
     > # This program is free software; you can redistribute it and/or
     > # modify it under the terms of the GNU General Public License
     > # as published by the Free Software Foundation; either version 3
     > # of the License, or (at your option) any later version.
     > #
     > # This program is distributed in the hope that it will be useful,
     > # but WITHOUT ANY WARRANTY; without even the implied warranty of
     > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
     > # GNU General Public License for more details.
     > #
     > # You should have received a copy of the GNU General Public License
     > # along with this program; if not, write to the Free Software
     > # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
     >
     > library(testthat)
     > library(rstanarm)
     Loading required package: Rcpp
     rstanarm (Version 2.15.3, packaged: 2017-04-29 06:18:44 UTC)
     - Do not expect the default priors to remain the same in future rstanarm versions.
     Thus, R scripts should specify priors explicitly, even if they are just the defaults.
     - For execution on a local, multicore CPU with excess RAM we recommend calling
     options(mc.cores = parallel::detectCores())
     > Sys.unsetenv("R_TESTS")
     > example(example_model)
    
     exmpl_> example_model <-
     exmpl_+ stan_glmer(cbind(incidence, size - incidence) ~ size + period + (1|herd),
     exmpl_+ data = lme4::cbpp, family = binomial,
     exmpl_+ # this next line is only to keep the example small in size!
     exmpl_+ chains = 2, cores = 1, seed = 12345, iter = 500)
    
     SAMPLING FOR MODEL 'binomial' NOW (CHAIN 1).
Flavor: r-patched-solaris-sparc

Version: 2.15.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 2-15 (./children/SETTINGS-knitr.txt)
    Quitting from lines NA-15 (./children/SETTINGS-knitr.txt)
    Error: processing vignette 'aov.Rmd' failed with diagnostics:
    object 'params' not found
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.15.3
Check: examples
Result: ERROR
    Running examples in ‘rstanarm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: example_model
    > ### Title: Example model
    > ### Aliases: example_model
    >
    > ### ** Examples
    >
    > example_model <-
    + stan_glmer(cbind(incidence, size - incidence) ~ size + period + (1|herd),
    + data = lme4::cbpp, family = binomial,
    + # this next line is only to keep the example small in size!
    + chains = 2, cores = 1, seed = 12345, iter = 500)
    
    SAMPLING FOR MODEL 'binomial' NOW (CHAIN 1).
    
    Gradient evaluation took 0.000179 seconds
    1000 transitions using 10 leapfrog steps per transition would take 1.79 seconds.
    Adjust your expectations accordingly!
    
    
    Iteration: 1 / 500 [ 0%] (Warmup)
    [1] "Error in sampler$call_sampler(args_list[[i]]) : "
    [2] " c++ exception (unknown reason)"
    error occurred during calling the sampler; sampling not done
    Error in check_stanfit(stanfit) :
     Invalid stanfit object produced please report bug
    Calls: stan_glmer -> stan_glm.fit -> check_stanfit
    Execution halted
Flavor: r-release-osx-x86_64

Version: 2.15.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     SAMPLING FOR MODEL 'binomial' NOW (CHAIN 1).
    
     Gradient evaluation took 0.000173 seconds
     1000 transitions using 10 leapfrog steps per transition would take 1.73 seconds.
     Adjust your expectations accordingly!
    
    
     Iteration: 1 / 500 [ 0%] (Warmup)
     [1] "Error in sampler$call_sampler(args_list[[i]]) : "
     [2] " c++ exception (unknown reason)"
     error occurred during calling the sampler; sampling not done
     Error in check_stanfit(stanfit) :
     Invalid stanfit object produced please report bug
     Calls: example ... eval -> stan_glmer -> stan_glm.fit -> check_stanfit
     Execution halted
Flavor: r-release-osx-x86_64