CRAN Package Check Results for Package sara4r

Last updated on 2021-05-16 21:47:54 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.8 16.78 109.02 125.80 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.8 11.00 82.94 93.94 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.8 157.64 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.8 148.21 NOTE
r-devel-windows-ix86+x86_64 0.0.8 29.00 82.00 111.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 0.0.8 NOTE
r-patched-linux-x86_64 0.0.8 13.74 105.05 118.79 NOTE
r-patched-solaris-x86 0.0.8 224.60 NOTE
r-release-linux-x86_64 0.0.8 14.35 100.45 114.80 OK
r-release-macos-x86_64 0.0.8 OK
r-release-windows-ix86+x86_64 0.0.8 23.00 83.00 106.00 OK
r-oldrel-macos-x86_64 0.0.8 ERROR
r-oldrel-windows-ix86+x86_64 0.0.8 17.00 112.00 129.00 OK

Check Details

Version: 0.0.8
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 0.0.8
Check: dependencies in R code
Result: NOTE
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: S3 generic/method consistency
Result: WARN
    No protocol specified
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: replacement functions
Result: WARN
    No protocol specified
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: foreign function calls
Result: NOTE
    No protocol specified
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: R code for possible problems
Result: NOTE
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: for missing documentation entries
Result: WARN
    No protocol specified
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: for code/documentation mismatches
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: Rd \usage sections
Result: NOTE
    No protocol specified
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: examples
Result: ERROR
    Running examples in ‘sara4r-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: sara4r
    > ### Title: An R-GUI for Spatial Analysis of Surface Runoff using the
    > ### NRCS-CN Method
    > ### Aliases: sara4r
    >
    > ### ** Examples
    >
    > sara4r()
    
    (R:77307): GLib-GObject-WARNING **: invalid (NULL) pointer instance
    
    (R:77307): GLib-GObject-CRITICAL **: g_signal_connect_data: assertion `G_TYPE_CHECK_INSTANCE (instance)' failed
    
    (R:77307): Gtk-WARNING **: Screen for GtkWindow not set; you must always set
    a screen for a GtkWindow before using the window
    
    (R:77307): Gdk-CRITICAL **: gdk_screen_get_default_colormap: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77307): Gdk-CRITICAL **: gdk_colormap_get_visual: assertion `GDK_IS_COLORMAP (colormap)' failed
    
    (R:77307): Gdk-CRITICAL **: gdk_screen_get_default_colormap: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77307): Gdk-CRITICAL **: gdk_screen_get_root_window: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77307): Gdk-CRITICAL **: gdk_screen_get_root_window: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77307): Gdk-CRITICAL **: gdk_window_new: assertion `GDK_IS_WINDOW (parent)' failed
    
     *** caught segfault ***
    address 0x18, cause 'memory not mapped'
    
    Traceback:
     1: .RGtkCall("S_gtk_widget_show_all", object, PACKAGE = "RGtk2")
     2: method(obj, ...)
     3: INIRENA$showAll()
     4: sara4r()
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-macos-x86_64

Version: 0.0.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘howto.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    No protocol specified
    
    (R:77326): GLib-GObject-WARNING **: invalid (NULL) pointer instance
    
    (R:77326): GLib-GObject-CRITICAL **: g_signal_connect_data: assertion `G_TYPE_CHECK_INSTANCE (instance)' failed
    
    (R:77326): Gtk-WARNING **: Screen for GtkWindow not set; you must always set
    a screen for a GtkWindow before using the window
    
    (R:77326): Gdk-CRITICAL **: gdk_screen_get_default_colormap: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77326): Gdk-CRITICAL **: gdk_colormap_get_visual: assertion `GDK_IS_COLORMAP (colormap)' failed
    
    (R:77326): Gdk-CRITICAL **: gdk_screen_get_default_colormap: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77326): Gdk-CRITICAL **: gdk_screen_get_root_window: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77326): Gdk-CRITICAL **: gdk_screen_get_root_window: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:77326): Gdk-CRITICAL **: gdk_window_new: assertion `GDK_IS_WINDOW (parent)' failed
    
     *** caught segfault ***
    address 0x18, cause 'memory not mapped'
    
    Traceback:
     1: .RGtkCall("S_gtk_widget_show_all", object, PACKAGE = "RGtk2")
     2: method(obj, ...)
     3: INIRENA$showAll()
     4: sara4r()
     5: eval(expr, envir, enclos)
     6: eval(expr, envir, enclos)
     7: withVisible(eval(expr, envir, enclos))
     8: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     9: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
    10: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
    11: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
    12: evaluate::evaluate(...)
    13: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
    14: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
    15: eng_r(options)
    16: block_exec(params)
    17: call_block(x)
    18: process_group.block(group)
    19: process_group(group)
    20: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    21: process_file(text, output)
    22: knit(input, text = text, envir = envir, quiet = quiet)
    23: (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
    24: vweave(...)
    25: engine$weave(file, quiet = quiet, encoding = enc)
    26: doTryCatch(return(expr), name, parentenv, handler)
    27: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    28: tryCatchList(expr, classes, parentenv, handlers)
    29: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    30: tools:::buildVignettes(dir = "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/sara4r.Rcheck/vign_test/sara4r", ser_elibs = "/tmp/Rtmp9qpL7H/file12d157becc247.rds")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-macos-x86_64