CRAN Package Check Results for Package socialmixr

Last updated on 2018-02-23 18:47:56 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.2 4.07 62.63 66.70 OK
r-devel-linux-x86_64-debian-gcc 0.1.2 2.89 44.89 47.78 OK
r-devel-linux-x86_64-fedora-clang 0.1.2 42.98 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.2 70.76 NOTE
r-devel-windows-ix86+x86_64 0.1.1 7.00 91.00 98.00 OK
r-patched-linux-x86_64 0.1.1 1.93 64.33 66.26 OK
r-patched-solaris-x86 0.1.2 97.80 NOTE
r-release-linux-x86_64 0.1.1 2.28 63.55 65.83 OK
r-release-windows-ix86+x86_64 0.1.1 8.00 109.00 117.00 OK
r-release-osx-x86_64 0.1.2 NOTE
r-oldrel-windows-ix86+x86_64 0.1.0 6.00 60.00 66.00 ERROR
r-oldrel-osx-x86_64 0.1.0 ERROR

Check Details

Version: 0.1.2
Check: data for non-ASCII characters
Result: NOTE
     Note: found 1 marked UTF-8 string
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64

Version: 0.1.0
Check: R code for possible problems
Result: NOTE
    contact_matrix: possible error in xtabs(data = contacts.sample, formula
     = weight ~ agegroup + cnt.agegroup, addNA = TRUE): unused argument
     (addNA = TRUE)
    contact_matrix: possible error in xtabs(data = part.sample, formula =
     weight ~ agegroup, addNA = TRUE): unused argument (addNA = TRUE)
Flavors: r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in 'socialmixr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: contact_matrix
    > ### Title: Generate a contact matrix from diary survey data
    > ### Aliases: contact_matrix
    >
    > ### ** Examples
    >
    > data(polymod)
    > contact_matrix(polymod, countries = "United Kingdom", age.limits = c(0, 1, 5, 15))
    Using Polymod Social Contact Data. To cite this in a publication, use the 'cite' function
    Sampling the age of contacts with missing age from other participants of the same age group.
     To change this behaviour, set the 'missing.contact.age' option
    Error in xtabs(data = contacts.sample, formula = weight ~ agegroup + cnt.agegroup, :
     unused argument (addNA = TRUE)
    Calls: contact_matrix -> xtabs
    Execution halted
Flavors: r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [14s]
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     @Misc{,
     title = {Polymod Social Contact Data},
     author = {Joël Mossong and Niel Hens and Mark Jit and Philippe Beutels and Kari Auranen and Rafael Mikolajczyk and Marco Massari and Stefania Salmaso and Gianpaolo Scalia Tomba and Jacco Wallinga and Janneke Heijne and Malgorzata Sadkowska-Todys and Magdalena Rosinska and W. John Edmunds},
     doi = {10.5281/zenodo.1059920},
     publisher = {Zenodo},
     note = {Version 1.1},
     year = {2017},
     }
    
     == testthat results ===========================================================
     OK: 8 SKIPPED: 0 FAILED: 1
     1. Error: (unknown) (@test-matrix.r#13)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 57-58 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    unused argument (addNA = TRUE)
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 1 marked UTF-8 string
Flavor: r-oldrel-osx-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     doi = {10.5281/zenodo.1059920},
     publisher = {Zenodo},
     note = {Version 1.1},
     year = {2017},
     }
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 7 SKIPPED: 0 FAILED: 2
     1. Error: (unknown) (@test-matrix.r#13)
     2. Error: surveys can be downloaded (@test-surveys.r#10)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 57-58 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    unused argument (addNA = TRUE)
    Execution halted
Flavor: r-oldrel-osx-x86_64