CRAN Package Check Results for Package socialmixr

Last updated on 2018-08-18 10:50:47 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.3 4.02 69.57 73.59 OK
r-devel-linux-x86_64-debian-gcc 0.1.3 3.87 44.16 48.03 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.3 70.70 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.3 66.34 ERROR
r-devel-windows-ix86+x86_64 0.1.3 10.00 115.00 125.00 OK
r-patched-linux-x86_64 0.1.3 3.38 50.17 53.55 ERROR
r-patched-solaris-x86 0.1.3 89.00 ERROR
r-release-linux-x86_64 0.1.3 4.18 56.57 60.75 OK
r-release-windows-ix86+x86_64 0.1.3 10.00 121.00 131.00 OK
r-release-osx-x86_64 0.1.3 NOTE
r-oldrel-windows-ix86+x86_64 0.1.3 7.00 154.00 161.00 OK
r-oldrel-osx-x86_64 0.1.3 NOTE

Check Details

Version: 0.1.3
Check: examples
Result: ERROR
    Running examples in ‘socialmixr-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: get_survey
    > ### Title: Get a survey, either from its Zenodo repository, a set of files,
    > ### or a survey variable
    > ### Aliases: get_survey
    >
    > ### ** Examples
    >
    > list_surveys()
    Error in while_oai(url, args, token, as, ...) : Not Found (HTTP 404).
    Calls: list_surveys ... data.table -> list_records -> while_oai -> stop_for_status
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/11s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(socialmixr)
    
     Attaching package: 'socialmixr'
    
     The following object is masked from 'package:utils':
    
     cite
    
     >
     > test_check("socialmixr")
     ── 1. Error: list of surveys is not empty (@test-surveys.r#5) ─────────────────
     Not Found (HTTP 404).
     1: expect_true(nrow(list_surveys()) > 0) at testthat/test-surveys.r:5
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: nrow(list_surveys())
     5: list_surveys()
     6: data.table(list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite",
     set = "user-social_contact_data"))
     7: list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite", set = "user-social_contact_data")
     8: while_oai(url, args, token, as, ...)
     9: stop_for_status(res)
    
     ── 2. Error: surveys can be downloaded (@test-surveys.r#10) ───────────────────
     DOI '10.5281/zenodo.1059920' not found
     1: expect_true(class(suppressWarnings(get_survey("10.5281/zenodo.1059920"))) == "survey") at testthat/test-surveys.r:10
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: suppressWarnings(get_survey("10.5281/zenodo.1059920"))
     5: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
     6: get_survey("10.5281/zenodo.1059920")
     7: stop("DOI '", survey, "' not found")
    
    
     To cite POLYMOD social contact data in publications use:
    
     Mossong J, Hens N, Jit M, Beutels P, Auranen K, Mikolajczyk R, Massari
     M, Salmaso S, Tomba GS, Wallinga J, Heijne J, Sadkowska-Todys M,
     Rosinska M, Edmunds WJ (2017). "POLYMOD social contact data." doi:
     10.5281/zenodo.1157934 (URL: https://doi.org/10.5281/zenodo.1157934),
     Version 1.1.
    
     A BibTeX entry for LaTeX users is
    
     @Misc{,
     title = {POLYMOD social contact data},
     author = {Joël Mossong and Niel Hens and Mark Jit and Philippe Beutels and Kari Auranen and Rafael Mikolajczyk and Marco Massari and Stefania Salmaso and Gianpaolo Scalia Tomba and Jacco Wallinga and Janneke Heijne and Malgorzata Sadkowska-Todys and Magdalena Rosinska and W. John Edmunds},
     doi = {https://doi.org/10.5281/zenodo.1157934},
     note = {Version 1.1},
     year = {2017},
     }
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 39 SKIPPED: 0 FAILED: 2
     1. Error: list of surveys is not empty (@test-surveys.r#5)
     2. Error: surveys can be downloaded (@test-surveys.r#10)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 77-78 (introduction.Rmd)
    Error: processing vignette ‘introduction.Rmd’ failed with diagnostics:
    Not Found (HTTP 404).
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64

Version: 0.1.3
Check: data for non-ASCII characters
Result: NOTE
     Note: found 1 marked UTF-8 string
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.3
Check: examples
Result: ERROR
    Running examples in ‘socialmixr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: get_survey
    > ### Title: Get a survey, either from its Zenodo repository, a set of files,
    > ### or a survey variable
    > ### Aliases: get_survey
    >
    > ### ** Examples
    >
    > list_surveys()
    Error in while_oai(url, args, token, as, ...) : Not Found (HTTP 404).
    Calls: list_surveys ... data.table -> list_records -> while_oai -> stop_for_status
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 0.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(socialmixr)
    
     Attaching package: 'socialmixr'
    
     The following object is masked from 'package:utils':
    
     cite
    
     >
     > test_check("socialmixr")
     OMP: Warning #96: Cannot form a team with 17 threads, using 2 instead.
     OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
     ── 1. Error: list of surveys is not empty (@test-surveys.r#5) ─────────────────
     Not Found (HTTP 404).
     1: expect_true(nrow(list_surveys()) > 0) at testthat/test-surveys.r:5
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: nrow(list_surveys())
     5: list_surveys()
     6: data.table(list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite",
     set = "user-social_contact_data"))
     7: list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite", set = "user-social_contact_data")
     8: while_oai(url, args, token, as, ...)
     9: stop_for_status(res)
    
     ── 2. Error: surveys can be downloaded (@test-surveys.r#10) ───────────────────
     DOI '10.5281/zenodo.1059920' not found
     1: expect_true(class(suppressWarnings(get_survey("10.5281/zenodo.1059920"))) == "survey") at testthat/test-surveys.r:10
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: suppressWarnings(get_survey("10.5281/zenodo.1059920"))
     5: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
     6: get_survey("10.5281/zenodo.1059920")
     7: stop("DOI '", survey, "' not found")
    
    
     To cite POLYMOD social contact data in publications use:
    
     Mossong J, Hens N, Jit M, Beutels P, Auranen K, Mikolajczyk R, Massari
     M, Salmaso S, Tomba GS, Wallinga J, Heijne J, Sadkowska-Todys M,
     Rosinska M, Edmunds WJ (2017). "POLYMOD social contact data." doi:
     10.5281/zenodo.1157934 (URL: https://doi.org/10.5281/zenodo.1157934),
     Version 1.1.
    
     A BibTeX entry for LaTeX users is
    
     @Misc{,
     title = {POLYMOD social contact data},
     author = {Joël Mossong and Niel Hens and Mark Jit and Philippe Beutels and Kari Auranen and Rafael Mikolajczyk and Marco Massari and Stefania Salmaso and Gianpaolo Scalia Tomba and Jacco Wallinga and Janneke Heijne and Malgorzata Sadkowska-Todys and Magdalena Rosinska and W. John Edmunds},
     doi = {https://doi.org/10.5281/zenodo.1157934},
     note = {Version 1.1},
     year = {2017},
     }
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 39 SKIPPED: 0 FAILED: 2
     1. Error: list of surveys is not empty (@test-surveys.r#5)
     2. Error: surveys can be downloaded (@test-surveys.r#10)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(socialmixr)
    
     Attaching package: 'socialmixr'
    
     The following object is masked from 'package:utils':
    
     cite
    
     >
     > test_check("socialmixr")
     ── 1. Error: list of surveys is not empty (@test-surveys.r#5) ─────────────────
     Not Found (HTTP 404).
     1: expect_true(nrow(list_surveys()) > 0) at testthat/test-surveys.r:5
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: nrow(list_surveys())
     5: list_surveys()
     6: data.table(list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite",
     set = "user-social_contact_data"))
     7: list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite", set = "user-social_contact_data")
     8: while_oai(url, args, token, as, ...)
     9: stop_for_status(res)
    
     ── 2. Error: surveys can be downloaded (@test-surveys.r#10) ───────────────────
     DOI '10.5281/zenodo.1059920' not found
     1: expect_true(class(suppressWarnings(get_survey("10.5281/zenodo.1059920"))) == "survey") at testthat/test-surveys.r:10
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: suppressWarnings(get_survey("10.5281/zenodo.1059920"))
     5: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
     6: get_survey("10.5281/zenodo.1059920")
     7: stop("DOI '", survey, "' not found")
    
    
     To cite POLYMOD social contact data in publications use:
    
     Mossong J, Hens N, Jit M, Beutels P, Auranen K, Mikolajczyk R, Massari
     M, Salmaso S, Tomba GS, Wallinga J, Heijne J, Sadkowska-Todys M,
     Rosinska M, Edmunds WJ (2017). "POLYMOD social contact data." doi:
     10.5281/zenodo.1157934 (URL: https://doi.org/10.5281/zenodo.1157934),
     Version 1.1.
    
     A BibTeX entry for LaTeX users is
    
     @Misc{,
     title = {POLYMOD social contact data},
     author = {Joël Mossong and Niel Hens and Mark Jit and Philippe Beutels and Kari Auranen and Rafael Mikolajczyk and Marco Massari and Stefania Salmaso and Gianpaolo Scalia Tomba and Jacco Wallinga and Janneke Heijne and Malgorzata Sadkowska-Todys and Magdalena Rosinska and W. John Edmunds},
     doi = {https://doi.org/10.5281/zenodo.1157934},
     note = {Version 1.1},
     year = {2017},
     }
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 39 SKIPPED: 0 FAILED: 2
     1. Error: list of surveys is not empty (@test-surveys.r#5)
     2. Error: surveys can be downloaded (@test-surveys.r#10)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [9s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(socialmixr)
    
     Attaching package: 'socialmixr'
    
     The following object is masked from 'package:utils':
    
     cite
    
     >
     > test_check("socialmixr")
     ── 1. Error: list of surveys is not empty (@test-surveys.r#5) ─────────────────
     Not Found (HTTP 404).
     1: expect_true(nrow(list_surveys()) > 0) at testthat/test-surveys.r:5
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: nrow(list_surveys())
     5: list_surveys()
     6: data.table(list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite",
     set = "user-social_contact_data"))
     7: list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite", set = "user-social_contact_data")
     8: while_oai(url, args, token, as, ...)
     9: stop_for_status(res)
    
     ── 2. Error: surveys can be downloaded (@test-surveys.r#10) ───────────────────
     DOI '10.5281/zenodo.1059920' not found
     1: expect_true(class(suppressWarnings(get_survey("10.5281/zenodo.1059920"))) == "survey") at testthat/test-surveys.r:10
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: suppressWarnings(get_survey("10.5281/zenodo.1059920"))
     5: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
     6: get_survey("10.5281/zenodo.1059920")
     7: stop("DOI '", survey, "' not found")
    
    
     To cite POLYMOD social contact data in publications use:
    
     Mossong J, Hens N, Jit M, Beutels P, Auranen K, Mikolajczyk R, Massari
     M, Salmaso S, Tomba GS, Wallinga J, Heijne J, Sadkowska-Todys M,
     Rosinska M, Edmunds WJ (2017). "POLYMOD social contact data." doi:
     https://doi.org/10.5281/zenodo.1157934 (URL:
     http://doi.org/https://doi.org/10.5281/zenodo.1157934), Version 1.1.
    
     A BibTeX entry for LaTeX users is
    
     @Misc{,
     title = {POLYMOD social contact data},
     author = {Joël Mossong and Niel Hens and Mark Jit and Philippe Beutels and Kari Auranen and Rafael Mikolajczyk and Marco Massari and Stefania Salmaso and Gianpaolo Scalia Tomba and Jacco Wallinga and Janneke Heijne and Malgorzata Sadkowska-Todys and Magdalena Rosinska and W. John Edmunds},
     doi = {https://doi.org/10.5281/zenodo.1157934},
     note = {Version 1.1},
     year = {2017},
     }
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 39 SKIPPED: 0 FAILED: 2
     1. Error: list of surveys is not empty (@test-surveys.r#5)
     2. Error: surveys can be downloaded (@test-surveys.r#10)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [15s/27s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(socialmixr)
    
     Attaching package: 'socialmixr'
    
     The following object is masked from 'package:utils':
    
     cite
    
     >
     > test_check("socialmixr")
     ── 1. Error: list of surveys is not empty (@test-surveys.r#5) ─────────────────
     Not Found (HTTP 404).
     1: expect_true(nrow(list_surveys()) > 0) at testthat/test-surveys.r:5
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: nrow(list_surveys())
     5: list_surveys()
     6: data.table(list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite",
     set = "user-social_contact_data"))
     7: list_records("https://zenodo.org/oai2d", metadataPrefix = "oai_datacite", set = "user-social_contact_data")
     8: while_oai(url, args, token, as, ...)
     9: stop_for_status(res)
    
     ── 2. Error: surveys can be downloaded (@test-surveys.r#10) ───────────────────
     DOI '10.5281/zenodo.1059920' not found
     1: expect_true(class(suppressWarnings(get_survey("10.5281/zenodo.1059920"))) == "survey") at testthat/test-surveys.r:10
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: suppressWarnings(get_survey("10.5281/zenodo.1059920"))
     5: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
     6: get_survey("10.5281/zenodo.1059920")
     7: stop("DOI '", survey, "' not found")
    
    
     To cite POLYMOD social contact data in publications use:
    
     Mossong J, Hens N, Jit M, Beutels P, Auranen K, Mikolajczyk R, Massari
     M, Salmaso S, Tomba GS, Wallinga J, Heijne J, Sadkowska-Todys M,
     Rosinska M, Edmunds WJ (2017). "POLYMOD social contact data." doi:
     https://doi.org/10.5281/zenodo.1157934 (URL:
     http://doi.org/https://doi.org/10.5281/zenodo.1157934), Version 1.1.
    
     A BibTeX entry for LaTeX users is
    
     @Misc{,
     title = {POLYMOD social contact data},
     author = {Joël Mossong and Niel Hens and Mark Jit and Philippe Beutels and Kari Auranen and Rafael Mikolajczyk and Marco Massari and Stefania Salmaso and Gianpaolo Scalia Tomba and Jacco Wallinga and Janneke Heijne and Malgorzata Sadkowska-Todys and Magdalena Rosinska and W. John Edmunds},
     doi = {https://doi.org/10.5281/zenodo.1157934},
     note = {Version 1.1},
     year = {2017},
     }
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 39 SKIPPED: 0 FAILED: 2
     1. Error: list of surveys is not empty (@test-surveys.r#5)
     2. Error: surveys can be downloaded (@test-surveys.r#10)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 77-78 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    Not Found (HTTP 404).
    Execution halted
Flavor: r-patched-solaris-x86