CRAN Package Check Results for Package sos4R

Last updated on 2020-05-29 17:49:18 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.0 21.41 621.89 643.30 ERROR
r-devel-linux-x86_64-debian-gcc 0.4.0 19.45 522.07 541.52 ERROR
r-devel-linux-x86_64-fedora-clang 0.4.0 732.47 OK
r-devel-linux-x86_64-fedora-gcc 0.4.0 775.58 OK
r-devel-windows-ix86+x86_64 0.4.0 52.00 594.00 646.00 OK
r-patched-linux-x86_64 0.4.0 22.29 635.34 657.63 OK
r-patched-solaris-x86 0.4.0 1120.70 WARN
r-release-linux-x86_64 0.4.0 21.15 630.24 651.39 OK
r-release-osx-x86_64 0.4.0 OK
r-release-windows-ix86+x86_64 0.4.0 42.00 759.00 801.00 OK
r-oldrel-osx-x86_64 0.4.0 WARN
r-oldrel-windows-ix86+x86_64 0.4.0 31.00 574.00 605.00 WARN

Check Details

Version: 0.4.0
Check: tests
Result: ERROR
     Running 'testthat.R' [61s/83s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > ############################################################################## #
     > # Copyright (C) 2019 by 52 North #
     > # Initiative for Geospatial Open Source Software GmbH #
     > # #
     > # Contact: Andreas Wytzisk #
     > # 52 North Initiative for Geospatial Open Source Software GmbH #
     > # Martin-Luther-King-Weg 24 #
     > # 48155 Muenster, Germany #
     > # info@52north.org #
     > # #
     > # This program is free software; you can redistribute and/or modify it under #
     > # the terms of the GNU General Public License version 2 as published by the #
     > # Free Software Foundation. #
     > # #
     > # This program is distributed WITHOUT ANY WARRANTY; even without the implied #
     > # WARRANTY OF MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU #
     > # General Public License for more details. #
     > # #
     > # You should have received a copy of the GNU General Public License along with #
     > # this program (see gpl-2.0.txt). If not, write to the Free Software #
     > # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA or #
     > # visit the Free Software Foundation web page, http://www.fsf.org. #
     > # #
     > # Author: Daniel Nuest (daniel.nuest@uni-muenster.de) #
     > # Created: 2010-09-24 #
     > # Project: sos4R - https://github.com/52North/sos4R #
     > # #
     > ############################################################################## #
     > #
     > # http://journal.r-project.org/archive/2011-1/RJournal_2011-1_Wickham.pdf
     > # or
     > # http://r-pkgs.had.co.nz/tests.html
     > #
     > # Do not execute this script manually! Use devtools::test()!
     > #
     > library("testthat")
     > library("webmockr")
     > library("sos4R")
     >
     > test_check("sos4R")
     -- 1. Error: KVP::sites(sos, empty = TRUE) returns a list of stations as Spatial
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsEmptyAndCoords(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     -- 2. Error: KVP::sites(sos, empty = FALSE) returns a list of stations as Spatia
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoords(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     -- 3. Error: KVP: sites(sos,includePhenomena=TRUE,...) returns a list of station
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformation(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     -- 4. Error: KVP: sites with metadata (@test_sites.R#614) ---------------------
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformationAndTemporalBBox(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     -- 5. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE,...) (@test_sit
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformationWithEmpty(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     -- 6. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE, includeTempora
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformationAndTemporalBBoxAndEmptySites(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     == testthat results ===========================================================
     [ OK: 1328 | SKIPPED: 52 | WARNINGS: 1 | FAILED: 6 ]
     1. Error: KVP::sites(sos, empty = TRUE) returns a list of stations as SpatialPointsDataFrame that contain siteIDs and coordinates (@test_sites.R#498)
     2. Error: KVP::sites(sos, empty = FALSE) returns a list of stations as SpatialPointsDataFrame that contain siteIDs and coordinates (@test_sites.R#536)
     3. Error: KVP: sites(sos,includePhenomena=TRUE,...) returns a list of stations as SpatialPointsDataFrame that contain siteIDs and coordinates (@test_sites.R#575)
     4. Error: KVP: sites with metadata (@test_sites.R#614)
     5. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE,...) (@test_sites.R#656)
     6. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE, includeTemporalBbox = TRUE,...) (@test_sites.R#693)
    
     Error: testthat unit tests failed
     In addition: Warning message:
     In extract_lang(f = comp_lang, y = quote(if (.isMethodsDispatchOn() && :
     devtools is incompatible with the current version of R. `load_all()` may function incorrectly.
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [46s/83s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > ############################################################################## #
     > # Copyright (C) 2019 by 52 North #
     > # Initiative for Geospatial Open Source Software GmbH #
     > # #
     > # Contact: Andreas Wytzisk #
     > # 52 North Initiative for Geospatial Open Source Software GmbH #
     > # Martin-Luther-King-Weg 24 #
     > # 48155 Muenster, Germany #
     > # info@52north.org #
     > # #
     > # This program is free software; you can redistribute and/or modify it under #
     > # the terms of the GNU General Public License version 2 as published by the #
     > # Free Software Foundation. #
     > # #
     > # This program is distributed WITHOUT ANY WARRANTY; even without the implied #
     > # WARRANTY OF MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU #
     > # General Public License for more details. #
     > # #
     > # You should have received a copy of the GNU General Public License along with #
     > # this program (see gpl-2.0.txt). If not, write to the Free Software #
     > # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA or #
     > # visit the Free Software Foundation web page, http://www.fsf.org. #
     > # #
     > # Author: Daniel Nuest (daniel.nuest@uni-muenster.de) #
     > # Created: 2010-09-24 #
     > # Project: sos4R - https://github.com/52North/sos4R #
     > # #
     > ############################################################################## #
     > #
     > # http://journal.r-project.org/archive/2011-1/RJournal_2011-1_Wickham.pdf
     > # or
     > # http://r-pkgs.had.co.nz/tests.html
     > #
     > # Do not execute this script manually! Use devtools::test()!
     > #
     > library("testthat")
     > library("webmockr")
     > library("sos4R")
     >
     > test_check("sos4R")
     ── 1. Error: KVP::sites(sos, empty = TRUE) returns a list of stations as Spatial
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsEmptyAndCoords(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     ── 2. Error: KVP::sites(sos, empty = FALSE) returns a list of stations as Spatia
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoords(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     ── 3. Error: KVP: sites(sos,includePhenomena=TRUE,...) returns a list of station
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformation(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     ── 4. Error: KVP: sites with metadata (@test_sites.R#614) ─────────────────────
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformationAndTemporalBBox(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     ── 5. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE,...) (@test_sit
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformationWithEmpty(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     ── 6. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE, includeTempora
     invalid 'x' type in 'x && y'
     Backtrace:
     1. sos4R:::.checkSitesDataFrameWithIdsAndCoordsAndPhenomenaInformationAndTemporalBBoxAndEmptySites(sitesDataFrame)
     2. testthat::expect_equal(...)
     4. testthat:::compare.character(act$val, exp$val, ...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 1328 | SKIPPED: 52 | WARNINGS: 1 | FAILED: 6 ]
     1. Error: KVP::sites(sos, empty = TRUE) returns a list of stations as SpatialPointsDataFrame that contain siteIDs and coordinates (@test_sites.R#498)
     2. Error: KVP::sites(sos, empty = FALSE) returns a list of stations as SpatialPointsDataFrame that contain siteIDs and coordinates (@test_sites.R#536)
     3. Error: KVP: sites(sos,includePhenomena=TRUE,...) returns a list of stations as SpatialPointsDataFrame that contain siteIDs and coordinates (@test_sites.R#575)
     4. Error: KVP: sites with metadata (@test_sites.R#614)
     5. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE,...) (@test_sites.R#656)
     6. Error: KVP::sites(sos, empty=TRUE, includePhenomena = TRUE, includeTemporalBbox = TRUE,...) (@test_sites.R#693)
    
     Error: testthat unit tests failed
     In addition: Warning message:
     In extract_lang(f = comp_lang, y = quote(if (.isMethodsDispatchOn() && :
     devtools is incompatible with the current version of R. `load_all()` may function incorrectly.
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘sos4R-vignette-02-ogc-sos.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-02-ogc-sos.Rmd’
    
    --- re-building ‘sos4R-vignette-03-sos-operations.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-03-sos-operations.Rmd’
    
    --- re-building ‘sos4R-vignette-04-extensions.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-04-extensions.Rmd’
    
    --- re-building ‘sos4R-vignette-05-wrapper-functions.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 162-165 (sos4R-vignette-05-wrapper-functions.Rmd)
    Error: processing vignette 'sos4R-vignette-05-wrapper-functions.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘sos4R-vignette-05-wrapper-functions.Rmd’
    
    --- re-building ‘sos4R.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 186-193 (sos4R.Rmd)
    Error: processing vignette 'sos4R.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘sos4R.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘sos4R-vignette-05-wrapper-functions.Rmd’ ‘sos4R.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘sos4R-vignette-02-ogc-sos.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-02-ogc-sos.Rmd’
    
    --- re-building ‘sos4R-vignette-03-sos-operations.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-03-sos-operations.Rmd’
    
    --- re-building ‘sos4R-vignette-04-extensions.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-04-extensions.Rmd’
    
    --- re-building ‘sos4R-vignette-05-wrapper-functions.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 162-165 (sos4R-vignette-05-wrapper-functions.Rmd)
    Error: processing vignette 'sos4R-vignette-05-wrapper-functions.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘sos4R-vignette-05-wrapper-functions.Rmd’
    
    --- re-building ‘sos4R.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 186-193 (sos4R.Rmd)
    Error: processing vignette 'sos4R.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘sos4R.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘sos4R-vignette-05-wrapper-functions.Rmd’ ‘sos4R.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'sos4R-vignette-02-ogc-sos.Rmd' using rmarkdown
    --- finished re-building 'sos4R-vignette-02-ogc-sos.Rmd'
    
    --- re-building 'sos4R-vignette-03-sos-operations.Rmd' using rmarkdown
    --- finished re-building 'sos4R-vignette-03-sos-operations.Rmd'
    
    --- re-building 'sos4R-vignette-04-extensions.Rmd' using rmarkdown
    --- finished re-building 'sos4R-vignette-04-extensions.Rmd'
    
    --- re-building 'sos4R-vignette-05-wrapper-functions.Rmd' using rmarkdown
    Quitting from lines 222-226 (sos4R-vignette-05-wrapper-functions.Rmd)
    Error: processing vignette 'sos4R-vignette-05-wrapper-functions.Rmd' failed with diagnostics:
    Internal Server Error (HTTP 500). Failed to sending request to SOS.
    --- failed re-building 'sos4R-vignette-05-wrapper-functions.Rmd'
    
    --- re-building 'sos4R.Rmd' using rmarkdown
    --- finished re-building 'sos4R.Rmd'
    
    SUMMARY: processing the following file failed:
     'sos4R-vignette-05-wrapper-functions.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64