CRAN Package Check Results for Package superml

Last updated on 2019-05-23 18:57:22 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.0 10.41 45.69 56.10 OK --no-vignettes
r-devel-linux-x86_64-debian-gcc 0.4.0 7.93 34.46 42.39 OK --no-vignettes
r-devel-linux-x86_64-fedora-clang 0.4.0 125.18 OK
r-devel-linux-x86_64-fedora-gcc 0.4.0 123.66 OK
r-devel-windows-ix86+x86_64 0.4.0 16.00 74.00 90.00 OK
r-patched-linux-x86_64 0.4.0 11.29 40.53 51.82 OK --no-vignettes
r-patched-solaris-x86 0.4.0 142.50 ERROR
r-release-linux-x86_64 0.4.0 10.35 40.07 50.42 OK --no-vignettes
r-release-windows-ix86+x86_64 0.4.0 22.00 100.00 122.00 OK
r-release-osx-x86_64 0.4.0 OK
r-oldrel-windows-ix86+x86_64 0.4.0 11.00 69.00 80.00 OK
r-oldrel-osx-x86_64 0.4.0 OK

Check Details

Version: 0.4.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘xgboost’
Flavor: r-patched-solaris-x86

Version: 0.4.0
Check: examples
Result: ERROR
    Running examples in ‘superml-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: XGBTrainer
    > ### Title: Extreme Gradient Boosting Trainer
    > ### Aliases: XGBTrainer
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > library(data.table)
    > df <- copy(iris)
    >
    > # convert characters/factors to numeric
    > df$Species <- as.numeric(as.factor(df$Species))-1
    >
    > # initialise model
    > xgb <- XGBTrainer$new(objective = 'multi:softmax',
    + maximize = FALSE,
    + eval_metric = 'merror',
    + num_class=3,
    + n_estimators = 2)
    Warning in superml::check_package("xgboost") :
     Require Package xgboostfor this function to
     work. Installing it.
    Installing package into ‘/tmp/RtmptLa44V/RLIBS_5fc773f55760’
    (as ‘lib’ is unspecified)
    trying URL 'http://cran.us.r-project.org/src/contrib/xgboost_0.82.1.tar.gz'
    Content type 'application/x-gzip' length 811885 bytes (792 KB)
    ==================================================
    downloaded 792 KB
    
    * installing *source* package ‘xgboost’ ...
    ** package ‘xgboost’ successfully unpacked and MD5 sums checked
    ** using staged installation
    configure: creating ./config.status
    config.status: creating src/Makevars
    ** libs
    make: Fatal error in reader: Makevars, line 15: Unexpected end of line seen
    Current working directory /tmp/RtmpjLayQg/R.INSTALLd532923e36/xgboost/src
    ERROR: compilation failed for package ‘xgboost’
    * removing ‘/tmp/RtmptLa44V/RLIBS_5fc773f55760/xgboost’
    Warning in utils::install.packages(pkg, repos = "http://cran.us.r-project.org") :
     installation of package ‘xgboost’ had non-zero exit status
    
    The downloaded source packages are in
     ‘/tmp/Rtmpxxayqa/downloaded_packages’
    Finished installing.
    > xgb$fit(df, 'Species')
    converting the data into xgboost format..
    Error in loadNamespace(name) : there is no package called ‘xgboost’
    Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    trying URL 'http://cran.us.r-project.org/src/contrib/xgboost_0.82.1.tar.gz'
    Content type 'application/x-gzip' length 811885 bytes (792 KB)
    ==================================================
    downloaded 792 KB
    
    * installing *source* package ‘xgboost’ ...
    ** package ‘xgboost’ successfully unpacked and MD5 sums checked
    ** using staged installation
    configure: creating ./config.status
    config.status: creating src/Makevars
    ** libs
    make: Fatal error in reader: Makevars, line 15: Unexpected end of line seen
    Current working directory /tmp/RtmpAxaaas/R.INSTALL24002328738d/xgboost/src
    ERROR: compilation failed for package ‘xgboost’
    * removing ‘/tmp/RtmptLa44V/RLIBS_5fc773f55760/xgboost’
    
    The downloaded source packages are in
     '/tmp/RtmpwIaGfl/downloaded_packages'
    Quitting from lines 161-170 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    there is no package called 'xgboost'
    --- failed re-building ‘introduction.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘introduction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86