Last updated on 2021-01-19 14:47:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.18.0 | 73.54 | 578.15 | 651.69 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.18.0 | 56.90 | 434.59 | 491.49 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.18.0 | 856.06 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.18.0 | 795.00 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.18.0 | 109.00 | 543.00 | 652.00 | NOTE | --no-vignettes |
| r-patched-linux-x86_64 | 1.18.0 | 66.61 | 539.05 | 605.66 | NOTE | |
| r-patched-solaris-x86 | 1.18.0 | 982.00 | NOTE | |||
| r-release-linux-x86_64 | 1.18.0 | 61.05 | 549.68 | 610.73 | WARN | |
| r-release-macos-x86_64 | 1.18.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.18.0 | 124.00 | 565.00 | 689.00 | NOTE | --no-vignettes |
| r-oldrel-macos-x86_64 | 1.18.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.18.0 | 103.00 | 651.00 | 754.00 | NOTE | --no-vignettes |
Version: 1.18.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'INLA'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.18.0
Check: installed package size
Result: NOTE
installed size is 8.6Mb
sub-directories of 1Mb or more:
R 1.7Mb
doc 2.2Mb
libs 2.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.18.0
Check: Rd cross-references
Result: NOTE
Undeclared packages ‘RColorBrewer’, ‘scoringRules’, ‘coin’, ‘gtable’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.18.0
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 8.6Mb
sub-directories of 1Mb or more:
R 1.7Mb
doc 2.2Mb
libs 2.2Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.18.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘glrnb.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.18.0. For overview type ‘help(surveillance)’.
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
--- finished re-building ‘glrnb.Rnw’
--- re-building ‘hhh4.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.18.0. For overview type ‘help(surveillance)’.
Doing computations: FALSE
--- finished re-building ‘hhh4.Rnw’
--- re-building ‘monitoringCounts.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.18.0. For overview type ‘help(surveillance)’.
Loading required package: splines
Loading required package: gamlss.data
Attaching package: ‘gamlss.data’
The following object is masked from ‘package:datasets’:
sleep
Loading required package: gamlss.dist
Loading required package: MASS
Loading required package: nlme
Loading required package: parallel
********** GAMLSS Version 5.2-0 **********
For more on GAMLSS look at https://www.gamlss.com/
Type gamlssNews() to see new features/changes/bug fixes.
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
Error: processing vignette 'monitoringCounts.Rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘monitoringCounts.tex’ failed.
LaTeX errors:
! Undefined control sequence.
\hyper@linkurl ...tionraw >>}\relax \Hy@colorlink
\@urlcolor #1\Hy@xspace@en...
l.80 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.80 \begin{document}
--- failed re-building ‘monitoringCounts.Rnw’
--- re-building ‘surveillance.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.18.0. For overview type ‘help(surveillance)’.
Doing computations: FALSE
--- finished re-building ‘surveillance.Rnw’
--- re-building ‘hhh4_spacetime.Rnw’ using knitr
Loading required package: sp
Loading required package: xtable
This is surveillance 1.18.0. For overview type 'help(surveillance)'.
Doing computations: FALSE
Loading required namespace: spdep
Note: range of maximum neighbour order by region is 3-5
Error: processing vignette 'hhh4_spacetime.Rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘hhh4_spacetime.tex’ failed.
LaTeX errors:
! Undefined control sequence.
<recently read> \Hy@colorlink
l.106 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.106 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.106 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.106 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.106 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.106 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.106 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.106 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.106 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.106 \begin{document}
! Undefined control sequence.
\hyper@linkurl ...tionraw >>}\relax \Hy@colorlink
\@urlcolor #1\Hy@xspace@en...
l.106 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.106 \begin{document}
--- failed re-building ‘hhh4_spacetime.Rnw’
--- re-building ‘twinSIR.Rnw’ using knitr
Loading required package: sp
Loading required package: xtable
This is surveillance 1.18.0. For overview type 'help(surveillance)'.
Doing computations: FALSE
Warning in `[.epidata`(x, 1:5, , drop = FALSE) :
dropped class "epidata": subsetting blocks not allowed
Initialized 1 log-baseline interval: 0.00 92.55
Initial parameter vector: 1 1 1 1 0
Computing OSAIC weights for 4 epidemic covariates based on 1000 simulations ...
Initialized 1 log-baseline interval: 0.00 92.55
Initial parameter vector: 1 1 1 1 1 1 0
Computing OSAIC weights for 4 epidemic covariates based on 1000 simulations ...
Error: processing vignette 'twinSIR.Rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘twinSIR.tex’ failed.
LaTeX errors:
! Undefined control sequence.
<recently read> \Hy@colorlink
l.111 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.111 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.111 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.111 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.111 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.111 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.111 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.111 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.111 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.111 \begin{document}
! Undefined control sequence.
\hyper@linkurl ...tionraw >>}\relax \Hy@colorlink
\@urlcolor #1\Hy@xspace@en...
l.111 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.111 \begin{document}
--- failed re-building ‘twinSIR.Rnw’
--- re-building ‘twinstim.Rnw’ using knitr
Loading required package: sp
Loading required package: xtable
This is surveillance 1.18.0. For overview type 'help(surveillance)'.
Doing computations: FALSE
Loading required namespace: spdep
Note: auto-generated neighbourhood matrix contains 1 island
no epidemic component in model
Setting up the model environment ...
Loading required namespace: parallel
'imdfit_powerlaw' was fit with disabled 'cumCIF' -> calculate it now ...
Note: added the 'tau' component to object 'imdfit_powerlaw' for future use.
Warning in knitr::write_bib(c("memoise", "sp", "rgdal", "polyclip", "maptools", :
package(s) rgdal not found
Error: processing vignette 'twinstim.Rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘twinstim.tex’ failed.
LaTeX errors:
! Undefined control sequence.
<recently read> \Hy@colorlink
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
! Undefined control sequence.
<recently read> \Hy@colorlink
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
! Undefined control sequence.
\hyper@linkurl ...tionraw >>}\relax \Hy@colorlink
\@urlcolor #1\Hy@xspace@en...
l.108 \begin{document}
! Undefined control sequence.
\close@pdflink ->\Hy@endcolorlink
\Hy@VerboseLinkStop \pdfendlink
l.108 \begin{document}
--- failed re-building ‘twinstim.Rnw’
SUMMARY: processing the following files failed:
‘monitoringCounts.Rnw’ ‘hhh4_spacetime.Rnw’ ‘twinSIR.Rnw’
‘twinstim.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64