CRAN Package Check Results for Package treespace

Last updated on 2018-10-24 03:55:46 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 30.62 312.38 343.00 OK
r-devel-linux-x86_64-debian-gcc 1.1.3 28.73 242.37 271.10 OK
r-devel-linux-x86_64-fedora-clang 1.1.3 408.84 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.3 395.76 OK
r-devel-windows-ix86+x86_64 1.1.3 98.00 532.00 630.00 NOTE
r-patched-linux-x86_64 1.1.3 27.87 259.73 287.60 OK
r-patched-solaris-x86 1.1.3 463.90 WARN
r-release-linux-x86_64 1.1.3 29.41 260.46 289.87 ERROR
r-release-windows-ix86+x86_64 1.1.3 80.00 325.00 405.00 NOTE
r-release-osx-x86_64 1.1.3 WARN
r-oldrel-windows-ix86+x86_64 1.1.3 62.00 536.00 598.00 NOTE
r-oldrel-osx-x86_64 1.1.3 WARN

Check Details

Version: 1.1.3
Check: installed package size
Result: NOTE
     installed size is 6.5Mb
     sub-directories of 1Mb or more:
     doc 4.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ape
    Loading required package: ade4
    Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
    
     /// adegenet 2.1.1 is loaded ////////////
    
     > overview: '?adegenet'
     > tutorials/doc/questions: 'adegenetWeb()'
     > bug reports/feature requests: adegenetIssues()
    
    
    
    Attaching package: 'adegenet'
    
    The following object is masked from 'package:phangorn':
    
     AICc
    
    The following object is masked from 'package:treespace':
    
     .render.server.info
    
    Quitting from lines 136-138 (DengueVignette.Rmd)
    Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1.3
Check: package dependencies
Result: ERROR
    Packages required but not available:
     ‘htmlwidgets’ ‘rgl’ ‘RLumShiny’ ‘scatterD3’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-linux-x86_64

Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: ade4
    Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
    
     /// adegenet 2.1.1 is loaded ////////////
    
     > overview: '?adegenet'
     > tutorials/doc/questions: 'adegenetWeb()'
     > bug reports/feature requests: adegenetIssues()
    
    
    
    Attaching package: 'adegenet'
    
    The following object is masked from 'package:phangorn':
    
     AICc
    
    The following object is masked from 'package:treespace':
    
     .render.server.info
    
    Quitting from lines 136-138 (DengueVignette.Rmd)
    Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1.3
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-osx-x86_64

Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
    Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
    
     /// adegenet 2.1.1 is loaded ////////////
    
     > overview: '?adegenet'
     > tutorials/doc/questions: 'adegenetWeb()'
     > bug reports/feature requests: adegenetIssues()
    
    
    
    Attaching package: 'adegenet'
    
    The following object is masked from 'package:phangorn':
    
     AICc
    
    The following object is masked from 'package:treespace':
    
     .render.server.info
    
    Quitting from lines 136-138 (DengueVignette.Rmd)
    Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64