CRAN Package Check Results for Package umx

Last updated on 2020-01-21 23:51:14 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.5 31.66 446.50 478.16 OK
r-devel-linux-x86_64-debian-gcc 3.0.5 27.51 325.53 353.04 OK
r-devel-linux-x86_64-fedora-clang 3.0.5 536.48 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0.5 491.07 NOTE
r-devel-windows-ix86+x86_64 3.0.5 88.00 586.00 674.00 OK
r-devel-windows-ix86+x86_64-gcc8 3.0.5 83.00 458.00 541.00 OK
r-patched-linux-x86_64 3.0.5 29.05 387.36 416.41 OK
r-patched-solaris-x86 3.0.5 348.90 ERROR
r-release-linux-x86_64 3.0.5 25.14 388.75 413.89 OK
r-release-windows-ix86+x86_64 3.0.5 48.00 490.00 538.00 OK
r-release-osx-x86_64 3.0.5 NOTE
r-oldrel-windows-ix86+x86_64 3.0.5 36.00 303.00 339.00 OK
r-oldrel-osx-x86_64 3.0.5 NOTE

Check Details

Version: 3.0.5
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘numDeriv’ ‘sfsmisc’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.0.5
Check: installed package size
Result: NOTE
     installed size is 5.6Mb
     sub-directories of 1Mb or more:
     R 1.0Mb
     help 4.1Mb
Flavor: r-patched-solaris-x86

Version: 3.0.5
Check: examples
Result: ERROR
    Running examples in ‘umx-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: loadings.MxModel
    > ### Title: Extract factor loadings from an EFA (factor analysis).
    > ### Aliases: loadings.MxModel
    >
    > ### ** Examples
    >
    > myVars <- c("mpg", "disp", "hp", "wt", "qsec")
    > m1 = umxEFA(name = "test", factors = 2, data = mtcars[, myVars])
    2 latent variables were created:F1, F2.
    Running EFA with 19 parameters
    Warning: In model 'EFA' Optimizer returned a non-zero status code 10. Starting values are not feasible. Consider mxTryHard()
    Error: The job for model 'EFA' exited abnormally with the error message: fit is not finite (0: The continuous part of the model implied covariance (loc2) is not positive definite in data 'EFA.data' row 16. Detail:
    covariance = matrix(c( # 5x5
     4.61726287963892e+17, 4.61726287963892e+17, 4.61726287963892e+17, 4.61726287963892e+17, 4.61726287963892e+17
    , 4.61726287963892e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17
    , 4.61726287963892e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17
    , 4.61726287963892e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17
    , 4.61726287963892e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17, 9.23452575927784e+17), byrow=TRUE, nrow=5, ncol=5)
    
    )
    Execution halted
Flavor: r-patched-solaris-x86

Version: 3.0.5
Check: tests
Result: ERROR
     Running ‘testthat.R’ [23s/23s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(umx)
     Loading required package: OpenMx
     To take full advantage of multiple cores, use:
     mxOption(key='Number of Threads', value=parallel::detectCores()) #now
     Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
     For an overview type '?umx'
    
     Attaching package: 'umx'
    
     The following object is masked from 'package:stats':
    
     loadings
    
     >
     > test_check("umx")
     Error: C stack usage 208966804 is too close to the limit
     ── 1. Error: (unknown) (@test_residuals.MxModel.r#15) ─────────────────────────
     The job for model 'test' exited abnormally with the error message: User interrupt
     Backtrace:
     1. umx::umxRAM(...)
     2. umx::xmu_safe_run_summary(...)
     3. base::tryCatch(...)
     4. base:::tryCatchList(expr, classes, parentenv, handlers)
     5. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     6. value[[3L]](cond)
    
    
    
     | | ai1| ci1| ei1|
     |:---|-----:|-----:|-----:|
     |gff | 0.408| 0.408| 0.408|
     |fc | 0.408| 0.408| 0.408|
     |qol | 0.408| 0.408| 0.408|
     |hap | 0.408| 0.408| 0.408|
     |sat | 0.408| 0.408| 0.408|
     |AD | 0.408| 0.408| 0.408|
    
    
     | | gff| fc| qol| hap| sat| AD|
     |:----------|-----:|-----:|-----:|-----:|-----:|-----:|
     |Specific a | 0.408| 0.408| 0.408| 0.408| 0.408| 0.408|
     |Specific c | 0.408| 0.408| 0.408| 0.408| 0.408| 0.408|
     |Specific e | 0.408| 0.408| 0.408| 0.408| 0.408| 0.408|
     Error: C stack usage 208966772 is too close to the limit
     Error: C stack usage 208966772 is too close to the limit
     Error: The job for model 'IPa1c1e1' exited abnormally with the error message: 1:User interrupt
     2:User interrupt
     Execution halted
Flavor: r-patched-solaris-x86