BisRNA: Analysis of RNA Cytosine-5 Methylation

Bisulfite-treated RNA non-conversion in a set of samples is analysed as follows: each sample's Poisson parameter is estimated, and non-conversion p-values are calculated for each sample and adjusted for multiple testing. Finally, combined non-conversion p-value and standard error of the non-conversion are calculated on the intersection of the set of samples. A low combined non-conversion p-value points to methylation of the corresponding RNA cytosine, or another event blocking bisulfite conversion.

Version: 0.2.1
Depends: R (≥ 3.3.2)
Imports: MASS, knitr, graphics, stats, utils
Suggests: IHW, testthat
Published: 2017-04-12
Author: Carine Legrand
Maintainer: Carine Legrand <c.legrand at dkfz.de>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: BisRNA citation info
CRAN checks: BisRNA results

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Reference manual: BisRNA.pdf
Package source: BisRNA_0.2.1.tar.gz
Windows binaries: r-devel: BisRNA_0.2.1.zip, r-release: BisRNA_0.2.1.zip, r-oldrel: BisRNA_0.2.1.zip
OS X El Capitan binaries: r-release: BisRNA_0.2.1.tgz
OS X Mavericks binaries: r-oldrel: BisRNA_0.2.1.tgz

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