CoDiNA: Co-Expression Differential Network Analysis

Categorize links from multiple networks in 3 categories: Common links (alpha) specific links (gamma), and different links (beta). Also categorizes the links into sub-categories and groups. The package includes a visualization tool for the networks. More information about the methodology can be found at: Gysi et. al., 2018 <arXiv:1802.00828>.

Version: 1.0.0
Depends: R (≥ 3.1)
Imports: data.table, igraph, magrittr, plyr, parallel, visNetwork, reshape2, geometry, plot3D
Suggests: knitr, rmarkdown
Published: 2018-02-08
Author: Deisy Morselli Gysi, Tiago de Miranda Fragoso, Eivind Almaas and Katja Nowick.
Maintainer: Deisy Morselli Gysi <deisy at bioinf.uni-leipzig.de>
License: GPL-2
NeedsCompilation: no
Citation: CoDiNA citation info
CRAN checks: CoDiNA results

Downloads:

Reference manual: CoDiNA.pdf
Package source: CoDiNA_1.0.0.tar.gz
Windows binaries: r-devel: CoDiNA_1.0.0.zip, r-release: CoDiNA_1.0.0.zip, r-oldrel: CoDiNA_1.0.0.zip
OS X binaries: r-release: CoDiNA_1.0.0.tgz, r-oldrel: CoDiNA_1.0.0.tgz

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