FishResp: Analytical Tool for Aquatic Respirometry

Calculates metabolic rate of fish and other aquatic organisms measured using an intermittent-flow respirometry approach. The tool is used to run a set of graphical QC tests of raw respirometry data, correct it for background respiration and chamber effect, filter and extract target values of absolute and mass-specific metabolic rate. Experimental design should include background respiration tests and measuring of one or more metabolic rate traits. The R package is ideally integrated with the pump controller 'PumpResp' and the DO meter 'SensResp' (open-source hardware by FishResp). Raw respirometry data can be also imported from 'AquaResp' (free software), 'AutoResp' ('LoligoSystems'), 'OxyView' ('PreSens'), 'Pyro Oxygen Logger' ('PyroScience') and 'Q-box Aqua' ('QubitSystems'). More information about the R package 'FishResp'is available in the publication by Morozov et al. (2019) <doi:10.1093/conphys/coz003>.

Version: 1.1.1
Depends: R (≥ 3.0.0)
Imports: chron, lattice, mclust, rMR, respirometry
Published: 2022-09-18
DOI: 10.32614/CRAN.package.FishResp
Author: Sergey Morozov [aut, cre], Scott McCairns [aut, ths], Juha Merila [ths], Federico Calboli [ctb], Jenni Prokkola [dtc], Stephen White [dtc], Daniel Montgomery [dtc], Laura Almodovar-Acevedo [dtc], Niclas Kolm [dtc], Alexander Kotrschal [dtc], Erik Gill [dtc]
Maintainer: Sergey Morozov <sergey.morozov at>
License: GPL-3
NeedsCompilation: no
SystemRequirements: Display resolution >= 1280x800; RAM >= 4GB
Citation: FishResp citation info
Materials: README NEWS
CRAN checks: FishResp results


Reference manual: FishResp.pdf


Package source: FishResp_1.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): FishResp_1.1.1.tgz, r-oldrel (arm64): FishResp_1.1.1.tgz, r-release (x86_64): FishResp_1.1.1.tgz, r-oldrel (x86_64): FishResp_1.1.1.tgz
Old sources: FishResp archive

Reverse dependencies:

Reverse suggests: respR


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