GARCOM: Gene and Region Counting of Mutations ("GARCOM")

Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.

Version: 1.2.0
Depends: R (≥ 2.10)
Imports: data.table (≥ 1.12.8), stats, vcfR (≥ 1.12.0)
Suggests: testthat
Published: 2020-10-16
Author: Sanjeev Sariya [aut, cre, cph], Giuseppe Tosto [aut, cph]
Maintainer: Sanjeev Sariya <ss5505 at cumc.columbia.edu>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: GARCOM citation info
Materials: README NEWS
CRAN checks: GARCOM results

Downloads:

Reference manual: GARCOM.pdf
Package source: GARCOM_1.2.0.tar.gz
Windows binaries: r-devel: GARCOM_1.2.0.zip, r-release: GARCOM_1.2.0.zip, r-oldrel: GARCOM_1.2.0.zip
macOS binaries: r-release: GARCOM_1.2.0.tgz, r-oldrel: GARCOM_1.2.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=GARCOM to link to this page.